Pairwise Alignments

Query, 195 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 200 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  103 bits (256), Expect = 3e-27
 Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 1/191 (0%)

Query: 5   INEKRLLTELKNGSFQAFERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWEVRE 64
           ++E+ L+  L +G   AF  LY  Y  +L  F M+     ++ AE++ Q AF  VW+ R 
Sbjct: 8   MDERELVLRLIDGDEDAFCELYAAYKNRLLYFAMKFVKSREF-AEDIFQDAFTVVWQSRR 66

Query: 65  RVEPESSFISFLCTIAKNLLMNMYQRQTVEYVYNEYLKNTGVDRDSQTEESIDLRFLNEY 124
            + P++SF S+L TI +N ++N  +    E    E++ +  VD  ++T   I    L + 
Sbjct: 67  FINPDASFSSYLYTIVRNRILNQIRDMANEDKLKEHILSHAVDSANETNNKILFDDLKDV 126

Query: 125 IDSLAEELPAQRKKIFILSKRQNYTNKEIAEMMGISESTVATQLSLAVKFMREQLMKHYD 184
           +    E+L  +++++F +S+    ++KEIAE +G+S +TV   +S+++K +R  L K+  
Sbjct: 127 LSRALEQLTPRQREVFNMSRDLQMSHKEIAEALGVSVNTVQEHISVSLKVIRAYLTKYSG 186

Query: 185 KIVALLFAFFC 195
               +L    C
Sbjct: 187 TSADILLILLC 197