Pairwise Alignments

Query, 307 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 306 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  494 bits (1271), Expect = e-144
 Identities = 247/307 (80%), Positives = 272/307 (88%), Gaps = 1/307 (0%)

Query: 1   MENMNPESLLRKAQALGEDIKEMESIDVMGAYQQAQTQIKTNRRRSMYNQLMRYAAFLTI 60
           MENM+PESLLRKAQALG+DIKEMESIDV+GAY QAQT+IKTNRR++MYNQLMRYAAFLTI
Sbjct: 1   MENMSPESLLRKAQALGDDIKEMESIDVLGAYYQAQTKIKTNRRKNMYNQLMRYAAFLTI 60

Query: 61  PLLLSSLILGYLYWGATDTEEKYAEVMAATGSVIRYELPDHSVVWLNSGSTLRYPTVFKK 120
           PL LSSL+LGYLY+  T+T+EKYAEV+ ATGSVIRYELPDHSVVWLN+GSTLRYPT FKK
Sbjct: 61  PLFLSSLVLGYLYFSGTETDEKYAEVVTATGSVIRYELPDHSVVWLNAGSTLRYPTTFKK 120

Query: 121 DNRNVELKGEAYFEVEADRKRPFYVNTPAGLSVYVYGTKFNVNAYEDDNSIETVLEKGKV 180
           DNR VELKGEAYFEV+AD+ RPFYVNTP GL +YVYGTKFNV AYEDDN IETVLEKGKV
Sbjct: 121 DNRLVELKGEAYFEVQADKDRPFYVNTPNGLGIYVYGTKFNVAAYEDDNYIETVLEKGKV 180

Query: 181 NVISPDGKTTVQLAPGERLLYNKVDQKLLKGKVDVYEKVAWKDGKLIFRNAELGEIFKRL 240
           NVI+PD + T+ LAPGE+LLY+K  QK  K KVDVY K+AWKDGKLIFRNA L EI KRL
Sbjct: 181 NVITPD-QETIALAPGEQLLYDKQSQKSEKNKVDVYGKIAWKDGKLIFRNASLEEILKRL 239

Query: 241 ARHFNVDIQFNNISGKEYKYRATFRNETLPQILDYLAKSAALKWRTEEAVQQADDTFTKK 300
            RHFNV+IQFNN SGKEYKYRATFR ETL QILDYLA+SA LKW+ EE  QQADDT +K 
Sbjct: 240 ERHFNVEIQFNNRSGKEYKYRATFRTETLSQILDYLARSADLKWKVEEPQQQADDTLSKT 299

Query: 301 KIIVDLY 307
           KI VDLY
Sbjct: 300 KIRVDLY 306