Pairwise Alignments

Query, 307 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 340 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  164 bits (416), Expect = 2e-45
 Identities = 97/268 (36%), Positives = 151/268 (56%), Gaps = 8/268 (2%)

Query: 23  MESIDVMGAYQQAQTQIKTNRRR--SMYNQLMRYAAFLTIPLLLSSLILGYLYWGATDTE 80
           M  +D   A  + ++++  NR+R  + +    R AA L IPLL++ ++    +WG ++ E
Sbjct: 59  MTKVDTEKALTKVKSRMTGNRQRKTTWWEWAQRAAAVLFIPLLVTLMVQ---HWGGSEQE 115

Query: 81  -EKYAEVMAATGSVIRYELPDHSVVWLNSGSTLRYPTVFKKDNRNVELKGEAYFEVEADR 139
             +  EV    G +    LPD ++V+LNS STL YP+ F  D RNV L+GEAYFEV  + 
Sbjct: 116 LAQMMEVKTNPGMMTSLTLPDGTLVFLNSESTLSYPSRFDSDTRNVTLQGEAYFEVAKNP 175

Query: 140 KRPFYVNTPAGLSVYVYGTKFNVNAYEDDNSIETVLEKGKVNVI--SPDGKTTVQLAPGE 197
           ++ F V+T     + V GT FNV AYE ++ I   L +GK+  I  S +G   V + PG+
Sbjct: 176 EKKFIVSTSHQSQIEVLGTHFNVEAYEKEDRIAATLVEGKIGFIYSSDNGSKKVLMDPGQ 235

Query: 198 RLLYNKVDQKLLKGKVDVYEKVAWKDGKLIFRNAELGEIFKRLARHFNVDIQFNNISGKE 257
           +L+Y+  D K+         ++AWK+GK+IFRN  L E  + L + +NV+    N   K 
Sbjct: 236 KLVYDIRDSKVQLYATSGESEIAWKEGKIIFRNTPLEEGLRMLEKRYNVEFIIKNDRLKG 295

Query: 258 YKYRATFRNETLPQILDYLAKSAALKWR 285
             +  TF N+ L +IL+Y   S+ ++WR
Sbjct: 296 DSFTGTFTNQRLERILEYFQLSSQIRWR 323