Pairwise Alignments

Query, 307 a.a., putative anti-sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 337 a.a., sigma factor regulatory protein, FecR/PupR family from Bacteroides ovatus ATCC 8483

 Score =  140 bits (353), Expect = 4e-38
 Identities = 89/257 (34%), Positives = 138/257 (53%), Gaps = 15/257 (5%)

Query: 40  KTNRRRSMYNQLMRYAAFLTIPLLLSSLILGYLYW-GATDTEEKYAEVM--AATGSVIRY 96
           KT+RR    + L RYAA +T+ L +      + YW G  D ++ +A++   A  GS  + 
Sbjct: 82  KTSRRGFRLSALWRYAAIVTVILAVGC----FSYWQGGVDVKDTFADISVEAPLGSRTKL 137

Query: 97  ELPDHSVVWLNSGSTLRYPTVFKKDNRNVELKGEAYFEVEADRKRPFYVNTPAGLSVYVY 156
            LPD ++VWLN+GS + Y   F  DNR +EL+GE YFEV  + K PF+V T   L + V 
Sbjct: 138 YLPDGTLVWLNAGSRMTYSQGFGVDNRMIELEGEGYFEVRRNEKLPFFVKT-KDLQLQVL 196

Query: 157 GTKFNVNAYEDDNSIETVLEKGKV---NVISPDGKTTVQLAPGERLLYNKVDQKLLKGKV 213
           GTKFN   Y +D+ +   L +GKV   N++  + +    LAP ER + NK +  +    V
Sbjct: 197 GTKFNFRDYPEDHEVVVSLLEGKVELNNLLKKEKEAV--LAPDERAILNKTNGLMTVETV 254

Query: 214 DVYEKVAWKDGKLIFRNAELGEIFKRLARHFNVDIQFNNISGKEYKYRATF--RNETLPQ 271
                  W  G L F    L +I K L R +NV I+  N S   +++   F  R +++ +
Sbjct: 255 TASNASQWTGGYLFFDEELLPDIVKELERSYNVTIRIANDSLNTFRFYGNFVRREQSIQE 314

Query: 272 ILDYLAKSAALKWRTEE 288
           +L+ LA +  ++++ EE
Sbjct: 315 VLEALASTEKIQYKIEE 331