Pairwise Alignments

Query, 702 a.a., heparinase III protein, heparitin sulfate lyase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 666 a.a., heparinase III protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  385 bits (990), Expect = e-111
 Identities = 231/675 (34%), Positives = 358/675 (53%), Gaps = 56/675 (8%)

Query: 48  QVFEAINLNYPGLEKVKEFYEAGEHYYAANALLEYYRTRTNVTNPNLSLINVTISEAEQA 107
           +VF  +NL+YPGLEKVK  ++ G+   AA ALL+YYR RTNV  P+++L  +TI + EQ 
Sbjct: 28  EVFSLLNLDYPGLEKVKALHQEGKDEDAAKALLDYYRARTNVKTPDINLKKITIGKEEQQ 87

Query: 108 KADYALVDYRFHVNNFYEDKETLKPYSVKQDGGINWEYSP-KDASDEYQKQLHRHQWFIP 166
            AD  L  + F V+  Y+       Y+  +D  INW+Y P KD  +E + QLHRH+WF P
Sbjct: 88  WADDGL-KHTFFVHKGYQPS-----YNYGED--INWQYWPVKD--NELRWQLHRHKWFTP 137

Query: 167 QAKAYRVSGDEKYIQSWIEVYKNWIENNP-----------------KPTTGPNTTSWWQL 209
             KAYRVSGDEKY + W   Y +WI+ NP                 K        +W  L
Sbjct: 138 MGKAYRVSGDEKYAKEWAYQYIDWIKKNPLVKMDKKEYELVSDGKIKGEVENVRFAWRPL 197

Query: 210 QVSTRIGDQVQLLEYFKNSVNFTPEWLSTFLVEFAEQADFLVDYPYESGGNILISQANAL 269
           +VS R+ DQ    + F  S +FTP++L+ FLV + + A  ++   Y   GN L+ +A  +
Sbjct: 198 EVSNRLQDQTTQFQLFLPSPSFTPDFLTEFLVNYHKHAVHILAN-YSDQGNHLLFEAQRM 256

Query: 270 ATAGTLMPEFKNAEKWMNTGYQILSEEVQNQIMSDGWHKEMSLHYHIGIVADFYEAMKLA 329
             AG   PEFK A  W  +G  IL+ EV  Q+ +DG   E+  HYH+  +  F +A+ +A
Sbjct: 257 IYAGAFFPEFKEAPAWRKSGIDILNREVNVQVYNDGGQFELDPHYHLAAINIFCKALGIA 316

Query: 330 EANQLSSKLPSDFTEPLRKAAEVVMYFTYPNYFIKGSDNVVPMFNDS-WSRTRNVLKNTN 388
           + N   ++ P ++ + + K        ++P+Y         P F+D+  +  + +LK  N
Sbjct: 317 DVNGFRNEFPQEYLDTIEKMIMFYANISFPDY-------TNPCFSDAKITEKKEMLK--N 367

Query: 389 FKQYVEMFPDSEELKYMQTAGNGGTAQGRTPNNDMKLFDQAGYYVLRNGWTPASTVMILS 448
           ++ + ++FP +E +KY+ T G     +G  P+   K F ++G++V RN W   +T M++ 
Sbjct: 368 YRAWSKLFPKNETIKYLATDGK----EGALPDYMSKGFLKSGFFVFRNSWGMDATQMVVK 423

Query: 449 NNKSNDASNSLSAYSHNQPDNGTFELYHNGRNFFPDSGVCTYYTSGGDNDLRYWFRGIDK 508
                        + H QPDNGTFE++ NG+N FPDSG   Y   G   + R W R    
Sbjct: 424 AGP--------KGFWHCQPDNGTFEMWFNGKNLFPDSGSYVYAGEGEVMEQRNWHRQTSV 475

Query: 509 HNTLSIGKQNIKKAAG-KLLKSEEGATELVVFENQGYDNLKHRRAVFYVNKKFFVLVDEG 567
           HNT+++  +N++       L   EG  + +V EN  Y N KHRR+VF+V+  +FV+VDE 
Sbjct: 476 HNTVTLDNKNLETTESVTKLWQPEGNIQTLVTENPSYKNFKHRRSVFFVDNTYFVIVDEV 535

Query: 568 IGNAEGTINLSFNLCEGTASEVVMDTDKNGVHTAFSNNNNIIVRTFANKAVTCSPFTGRI 627
            G+A+G++NL + + +G   E+    +     T F + +N+ ++ F  + ++     G  
Sbjct: 536 SGSAKGSVNLHYQMPKG---EIANSREDMTFLTQFEDGSNMKLQCFGPEGMSMKKEPGWC 592

Query: 628 AYLVDGAYNTRQSYTIDMNKSADETARYITVILPVNGSTDTSSISAKFIDSGYSENSASV 687
           +      Y  R + + ++ K  +   RYITVI PV  S D     AKF +  + EN   +
Sbjct: 593 STAYRKRYK-RMNVSFNVKKDNENAVRYITVIYPVKKSADAPKFDAKFKNKTFDENGLEI 651

Query: 688 EVSVNGETHTLSYTL 702
           EV VNG+  +L Y L
Sbjct: 652 EVKVNGKKQSLKYKL 666