Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1057 a.a., TonB-linked outer membrane protein, SusC/RagA family from Bacteroides ovatus ATCC 8483

 Score =  555 bits (1431), Expect = e-162
 Identities = 357/1072 (33%), Positives = 550/1072 (51%), Gaps = 71/1072 (6%)

Query: 18   LLALIMSISLHAQNATVKGVIVDETDTPLIGATVQVKGTATGSITDFDGNYTIKANKGAV 77
            +L  +  + + AQ  +V GV+ D +  P+IGA+V   GT  G +TD DGN+ +  +    
Sbjct: 15   ILFCLFPVWVLAQTVSVTGVVKDASGEPIIGASVVEAGTTNGIVTDLDGNFKLNVSAKGS 74

Query: 78   ITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSDLTGSVASIAAKDV 137
            +  S+IGY+TQ I   G+   ++ +  D + LDEVVVVGYG MKRSDLTGSV S+  + +
Sbjct: 75   LKISFIGYQTQTIPVAGKKQFDITLKEDAKVLDEVVVVGYGQMKRSDLTGSVVSVNDEAI 134

Query: 138  EGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDGFEVDD- 196
            +    +SV   L G+ AGVQ+ +  G PG   SI IRG+ +L   + P++++DG  +D  
Sbjct: 135  KKSVVTSVDQVLQGRAAGVQVQANSGMPGGSSSIRIRGINSLNASNEPIFVIDGVIIDGS 194

Query: 197  --------IDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGS 248
                    +  ++ SDI S++VLKDAS++AIYGARAANGV++ITTK G+ G   ITY+G 
Sbjct: 195  TGSGSDNALASINPSDIVSMDVLKDASATAIYGARAANGVIMITTKRGQKGEAQITYDGY 254

Query: 249  ASYRKISKKLDVLSPYEFVKLQGEVNSK-YSDSYFKPGNDDNDIPYRYQSLDDYMGVKGV 307
              ++++ KKLD+L+  E+ + +   + K YS + +   N DN+         D +G +G 
Sbjct: 255  IGWQEMPKKLDMLNLREYAEHKNVRSGKDYSGNDWGIVNKDNNF-----VRPDLLG-EGT 308

Query: 308  NWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKLS 367
            +WQDE F+      H+LS+ GGTD S Y        ++GI   SGF +   +   D ++ 
Sbjct: 309  DWQDEMFSKAMMTSHNLSVTGGTDKSNYALGAGYLNQDGIAVGSGFRRLNLRGSFDAQVK 368

Query: 368  KSLSFNITVNYALTNRKGVGTSADSGRFNMLAQILSARPTGGLKLTDDELLDSAIDPEML 427
              L   I  N+A +N +   T +D    +++   L   P+  ++  +        D    
Sbjct: 369  SYLKMGI--NFAFSNSRQKLTVSDE---SLIRTALLQSPSVAVRNAEGTFDGPDTD---- 419

Query: 428  ESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTAGTYNTTNNRTNIFY 487
                   Q NPV       N         N      II GLTFKT  +++     T  F 
Sbjct: 420  ----EWVQTNPVGLAMIKDNRNEKMGIRANTYAEATIIDGLTFKTELSFDYGVTNTYKFD 475

Query: 488  KDGSKEAYRNGQKPYGRTQMGRDVRWTNFNNLTWKQKVKKHNYDVMLGHEVSFRSTEYLL 547
               +  A  N  +  G      +  W+  N + + +    HN + M+G E+     EYL+
Sbjct: 476  PSYTFGAIENTDR-QGTFSKSYNKFWSWRNIVNYMKTFGVHNVNAMIGQEMQESKWEYLM 534

Query: 548  GEAMDFPFDNLGNDYLGLGATPSKVESSYSEKMLLSFFARGNYNYDNRYLLTATVRADGS 607
            G  M +   N   D     A  +K   +  E  +LS+F R  Y+YD++YLLT T+R DGS
Sbjct: 535  GSRMGY-LSNAATDLTLGDAATAKNNGNSGESSILSYFGRLFYSYDDKYLLTFTLRRDGS 593

Query: 608  TVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGWGIVGNDRISNYLSMDLYE 667
            + F   N+WG+FPS + AW+VS E+F+KD + ++N K+RLGWG+VGN  + N     +Y 
Sbjct: 594  SKFYKDNRWGWFPSAALAWKVSNESFLKDNNIINNLKLRLGWGVVGNQNVPNNAYKAIYS 653

Query: 668  ASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRLNVTADFFVKNTKDLL 727
            +     G   +   TP    N  LKWE + + NLG+D+    NR+ + AD + K T DLL
Sbjct: 654  SVATVWGTGLLAGNTP----NPELKWESTYSSNLGLDINLFQNRIELIADIYYKKTNDLL 709

Query: 728  LAQSLAHVTGFDSQ------MQNIGKIQNKGIELSLNSTNIQTRDFSWQTNFNISFIKNT 781
            L   L    G   Q       +N+G ++NKG+EL+LN+ NI    F W++N   S  +N 
Sbjct: 710  LQVPLPAYVGTSGQGSTSAPWKNVGSLENKGLELTLNTVNIDKGGFQWRSNVVFSMNRNK 769

Query: 782  LKGLASGVESMYARSGFDSNFTAYDYIATVGQSLGLIYGYEFDGVYQ-SSDFYTTPDNQL 840
            +K L +   S+  +S             +VG  +G  YGY+  G ++ ++DFY    +  
Sbjct: 770  VKSLDTAT-SLIDKSNQTGETITVLTRTSVGNPIGQFYGYKVIGRFEKATDFYYRDASGA 828

Query: 841  I----LKEGVTNNARYGTVKPGVVKYKDQDGDGIITTNDRTVIGNAMPKWFGGITNTFDY 896
            I    L EG++ +    ++  G   ++D + DG+I   DRT IGN  P +  G  N+F Y
Sbjct: 829  IKPVALPEGMSISK--NSIWIGDYIFEDVNKDGVINEQDRTYIGNPEPDFTFGFGNSFSY 886

Query: 897  KGIDFSFMLQFNYGNDIYNATRLYSTQSRNGRRNML------AEVA--DRWSPTNTSNL- 947
            KG D S  L  + GN++ N  R    ++  G  N+L      A++A  D   P +  N+ 
Sbjct: 887  KGFDLSINLTGSVGNEVVNWGR-RELENPRGNNNILKSALDYAQLALIDPNGPDDYRNIQ 945

Query: 948  VPSQDGYIVNDVYS------------RFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLR 995
            +   D Y      +            RF+EDGSFLR+++++ GYT P KW     +  L+
Sbjct: 946  IVGGDPYACRMAIAKGTDDSNYRFSDRFVEDGSFLRIQSISFGYTFPRKWLAPIGIQNLK 1005

Query: 996  LYATGQNLFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDLQF 1047
            LY   QN++  + Y G DPE+ SA+   +  G D   YP  R++TFG++L F
Sbjct: 1006 LYCNLQNVYTFTKYKGMDPEIGSANQDALLTGFDNYRYPSPRIYTFGLNLTF 1057