Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1068 a.a., TonB-linked outer membrane protein, SusC/RagA family from Bacteroides ovatus ATCC 8483

 Score =  539 bits (1388), Expect = e-157
 Identities = 359/1077 (33%), Positives = 547/1077 (50%), Gaps = 92/1077 (8%)

Query: 30   QNATVKGVIVDETDTPLIGATVQVKGTATGSITDFDGNYTIKA-NKGAVITFSYIGYKTQ 88
            Q  T+ G +VD  +  + G  VQVKGT  G+IT+ DG ++I   N  +V+ F++IGY  Q
Sbjct: 25   QGKTITGQVVDALNESMPGVNVQVKGTTNGTITNIDGKFSISVPNSKSVLIFTFIGYSKQ 84

Query: 89   EIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSDLTGSVASIAAKDVEGFKTSSVAGA 148
            EI    Q+ +NV++  D Q LDEVVVVGYGT K+SDLTG+ AS+     +  K  S+ G 
Sbjct: 85   EIVVGNQAKINVQLKEDAQNLDEVVVVGYGTAKKSDLTGATASLRPDANDASKAVSIDGL 144

Query: 149  LGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDG----------------- 191
            L G+IAG+ +T++  TPGA  S+ IRG  +L GD+ PLY++D                  
Sbjct: 145  LQGKIAGLNVTASMSTPGAASSVTIRGANSLRGDNQPLYVIDNVPQASTGEFAESAVGSG 204

Query: 192  -FEV--DDIDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGS 248
             F++  D +  ++ +DIE I VLKDAS++AIYG+R ANGV+LITTK GK G+  +    +
Sbjct: 205  DFQIAQDPLSAINPNDIEDITVLKDASATAIYGSRGANGVILITTKKGKAGKAKVNVTAN 264

Query: 249  ASYRKISKKLDVLSPYEFVKLQGEVNSKYSDS--YFKPGND------DNDIPYRY--QSL 298
             +        D+L+  E+       NSK      Y +P  +       N+  Y+    + 
Sbjct: 265  FTIANARNLHDMLNLEEYADY---TNSKLDQPRYYLQPNGEMRYVFSGNESAYQADPNNP 321

Query: 299  DDYMGVKGVNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTG 358
            + Y  +   NWQ E +   +SQ +S S+ GGT   KY  S +    NGI +N+G  +   
Sbjct: 322  ELYKVITYRNWQKEAYTSAFSQIYSASVSGGTAGMKYYISGNFKDINGIVENTGIKQGDL 381

Query: 359  KFRLDQKLSKSLSFNITVNYAL-TNRKGVGTSADSGRFNMLAQILSARPTGGLKLTDDEL 417
            +  L  +LSK ++ N+ ++ +L  N    G +   G    LA+  +   T    + DD  
Sbjct: 382  RANLTAELSKKVTLNLILSGSLKQNDMMTGGNTTGGVAGSLAR--TVLDTAPYIVPDD-- 437

Query: 418  LDSAIDPEMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTAGTYN 477
                 DP  LES   +   + V   + +TN K    ++G+ +++W I K  ++      N
Sbjct: 438  -----DPGALES--KMNVFSWVNDYDDITNDK---TFNGSLNLNWNINKYFSYSLRAGGN 487

Query: 478  TTNNRTNIFYKDGSKEAYRNGQKPYGRTQMG-RDVRWTNFNNLTWKQKVKKHNYDVMLGH 536
               N          ++ +   Q P G    G   +   N +N T +  +   N+++ L  
Sbjct: 488  IVVN---------DRKRWYGIQLPPGENVKGLLAISNVNKSNYTVENLL---NFNMDLTK 535

Query: 537  EVSFRSTEYLLGEAMDFPFDNLGNDYLGLGATPSKVESS----------YSEKMLLSFFA 586
            +    +T  +  +   F  +N+  +   +    +K  S+            +  LLS+  
Sbjct: 536  DFRLSATAGITYDEYHFLTENVSGNTFSIYDLRTKGLSNAGKVDVKQPIQKDYQLLSYLG 595

Query: 587  RGNYNYDNRYLLTATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVR 646
            R N +  ++YLLTA++RADGS+ F   N+W +FPSFS AWR+ +EA+MK++DW+S  KVR
Sbjct: 596  RVNLSAYDKYLLTASLRADGSSKFKKGNRWAYFPSFSLAWRMEQEAYMKNIDWLSQLKVR 655

Query: 647  LGWGIVGNDRISNYLSMDLYEAS-KYGVGN-NTVTVLTPKQLKNANLKWEGSSTINLGVD 704
            +G+G  GN  I  Y S+ +YE    Y  G+ N +T +  K L+N  LKWE +S+ N G+D
Sbjct: 656  VGYGETGNQGIDPYQSLSIYENKVDYADGDGNKLTSMQIKSLQNEGLKWERTSSWNAGLD 715

Query: 705  LGFLDNRLNVTADFFVKNTKDLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQT 764
             GF + RLN   D++ KNTKDLL+ ++L + +GF + M N G + NKG E SLN+  I++
Sbjct: 716  FGFFNGRLNGAFDYYRKNTKDLLVERALPYSSGFATVMINEGSLLNKGFEFSLNADIIRS 775

Query: 765  RDFSWQTNFNISFIKNTLKGLASGVESMYARSGFDSNF--TAYDY-----IATVGQSLGL 817
              + W    NI F K T++ L   V  + +  G       T  D+     I   G++ GL
Sbjct: 776  NGWKWNVGGNIGFNKTTIENLGLEVSDIGSLKGVRGYLGKTIGDHFGPANIFIEGEAPGL 835

Query: 818  IYGYEFDGVYQSSDF------YTTPDNQLILKEGVTNNARYGTVKPGVVKYKDQDGDGII 871
             +GY+  G+ Q  D       Y + D           N     +  G +K  D + DG++
Sbjct: 836  FFGYKTQGIIQEEDVVDGKVGYISSDGSTKYYTSSVGN----DMAAGNIKCVDVNEDGVV 891

Query: 872  TTNDRTVIGNAMPKWFGGITNTFDYKGIDFSFMLQFNYGNDIYNAT-RLYSTQSRNGRRN 930
              ND  VIG+  P +  G     ++K I  S      YGNDI N   R   T SR     
Sbjct: 892  DANDMAVIGDPNPDFTYGFQTRLEWKNISLSASFTGVYGNDILNTNIRYEQTPSRQAGNL 951

Query: 931  MLAEVADRWSPTNTSNLVPSQDGYIVNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFH 990
                  + W+P N SNL PS    +   VY R+IEDGS+LR  ++TL Y LP  W  K  
Sbjct: 952  RKDAYYNAWTPENRSNLYPSSTSNVKGVVYDRYIEDGSYLRCSDITLNYILPKAWMTKIG 1011

Query: 991  VSRLRLYATGQNLFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDLQF 1047
                 ++A+ +N F ++ YSGYDPEVNS +   +  G+D  A+P  R F FG+++ F
Sbjct: 1012 FQNTSIFASVKNAFVITNYSGYDPEVNSFAFDGLRRGVDMNAFPNMRSFVFGLNVTF 1068