Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1147 a.a., TonB-linked outer membrane protein, SusC/RagA family from Bacteroides ovatus ATCC 8483

 Score =  538 bits (1387), Expect = e-157
 Identities = 344/1055 (32%), Positives = 545/1055 (51%), Gaps = 69/1055 (6%)

Query: 29   AQNA-TVKGVIVDETDTPLIGATVQVKGTATGSITDFDGNYTI-KANKGAVITFSYIGYK 86
            AQ A T++G++ D+   P+IGA+VQ+KG  +G+ITD DG Y++    + A +T SYIGYK
Sbjct: 122  AQRARTIQGIVADDKGEPVIGASVQIKGEGSGTITDIDGRYSLMNVPESATLTISYIGYK 181

Query: 87   TQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSDLTGSVASIAAKDVEGFKTSSVA 146
            T  I    ++   + ++ D++ +DEVVVVGYG  ++ D++ S++S+ A+ +     S   
Sbjct: 182  TVNISAKDKNTAKITLVEDSKMIDEVVVVGYGVQRKRDVSTSISSVKAEQIADVSASDFR 241

Query: 147  GALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDGFEVD-DIDYLSNSDI 205
             AL G++ GVQ+T   G P    SI +RG+ T+   S PLYI+DG  V+     L+N+D+
Sbjct: 242  QALAGKMPGVQVTQPSGDPEGSVSIRVRGISTVNAGSDPLYIIDGVPVERGFANLNNNDV 301

Query: 206  ESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGSASYRKISKKLDVLSPYE 265
            ES+EVLKDASS+AIYG+R +NGV++ITTK G++ +  + Y+G    + +SKKL +++ Y+
Sbjct: 302  ESVEVLKDASSAAIYGSRGSNGVIIITTKQGQSEKMKVQYDGYYGIQSVSKKLSMMNAYQ 361

Query: 266  FVKLQGEVNSK-YSDSYFKPGNDDND-----------IPYR-YQSLDDYMGVKGVNWQDE 312
            F +   + +   Y D+   PG   +D           IP   +  L+   G+   +WQD 
Sbjct: 362  FAEFAKDGHDNAYLDA--NPGGSPDDPNGMRPNSWERIPTELFPYLNGDKGLTDTDWQDA 419

Query: 313  TFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKLSK-SLS 371
             F    +  H++SI G      Y  S + Y + GI  NS F K + +  LD K  +    
Sbjct: 420  IFRTAATTSHNVSISGRGKTVGYFISANYYDKEGIIINSDFKKYSMRMNLDGKYKRLKFG 479

Query: 372  FNITVNYALTNRKGVGTSADSGRFNMLAQILSARPTGGLKLTDDELLDSAIDPEMLESG- 430
             N + +Y+ +NR        SG   ++   L   P   +   D            + +  
Sbjct: 480  LNFSPSYSTSNRVDA-----SGSNGIVQSALMMPPVWPVYNADGSYNYQGNGYWRIGNDY 534

Query: 431  ESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKGLTFKTA--GTYNTTNN---RTNI 485
            +  A +NPV      ++        G      ++ KGLT+  +  G Y  ++N   R++ 
Sbjct: 535  QHNAVLNPVAMANLQSDVVDRMAIVGKVFAELELYKGLTYNISFGGDYYGSHNDQYRSSE 594

Query: 486  FYKDGSKEAYRNGQKPYGRTQMGRDVRWTNFNNLTWKQKVKK-HNYDVMLGHEVSFRSTE 544
                G K  Y     P   +  G    W   N + +   +K  H+ +V+L       + +
Sbjct: 595  LPLLGQKY-YDVKSNPTAYSSSGFYFNWLVENKINYNTTIKDAHSINVVLVQSAQKETYK 653

Query: 545  YLLGEAMDFPFDNLGNDYLGL--GATPSKVESSYSEKMLLSFFARGNYNYDNRYLLTATV 602
                 A DFP     NDY+    G T +K  S  ++  + S+ AR  Y+Y  +Y+ +A +
Sbjct: 654  GDNVTATDFP-----NDYIQTISGGTVTKGASDKTQWTIASYLARMQYSYKGKYMASAAI 708

Query: 603  RADGSTVFSNKNKWGFFPSFSAAWRVSEEAFM---KDVDWVSNFKVRLGWGIVGNDRISN 659
            RADGS+ F   N+WG+FPS S AWR+S E F    K + +V + K+R  +G+ GN +I N
Sbjct: 709  RADGSSRFGKNNRWGYFPSASLAWRISGEDFFMKAKCLSFVDDLKLRASYGVTGNFQIGN 768

Query: 660  YLSMDLYEASKY--GVGNNT-VTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRLNVTA 716
            Y  + L  +  Y  G GN   V    P  +KN +L WE ++ +N+GVDL      L +T 
Sbjct: 769  YDHLSLMASDNYILGTGNGQLVNGYKPSTIKNEDLSWEKNAMVNVGVDLQMFKGLLGLTV 828

Query: 717  DFFVKNTKDLLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTRDFSWQTNFNIS 776
            D++  NT ++LL   + H+TG+ + + NIGK+ N+G E++L S    T+DF +  N N +
Sbjct: 829  DYYNTNTSNMLLNVPVPHLTGYSTALMNIGKVNNRGWEVALTSQKNITKDFGYSFNANYA 888

Query: 777  FIKNTLKGLASGVESMYARSGFDSNFTAYDYIATVGQSLGLIYGYEFDGVYQSSDFYTTP 836
               N +K L  G   + +    D  +    YI  VG+ +G  Y    DG++ +       
Sbjct: 889  TNTNEVKALGPGNAPIISTGSVDHAY----YITKVGEPIGCYYLLVQDGIFSN------- 937

Query: 837  DNQLILKEGVTNNARYGTVKPGVVKYKDQDGDGIITTN-DRTVIGNAMPKWFGGITNTFD 895
                  +E +     +   +PG  ++ D DGDG++  + DRT++GN MP +  G      
Sbjct: 938  ------EEELKKYPHFSNTQPGDFRFVDVDGDGVMDLDKDRTIVGNYMPDFTYGFGGKVW 991

Query: 896  YKGIDFSFMLQFNYGNDIYNATRLYSTQSRNGRRNMLAEVADRW-SPTNTSNLVPSQDGY 954
            +KG D  F  Q  YGN+I N  R Y   +  G  N      +RW SP +  N   ++   
Sbjct: 992  FKGFDLDFNFQGVYGNEILNLNRRY-IDNLEGNTNGTTIALNRWKSPEDPGNGQVNRANR 1050

Query: 955  IVNDVYSR----FIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATGQNLFCVSGYS 1010
                   R     +EDGS+LRL+NVTLGYTLP   T+ F V +LR+Y +GQNL+  + YS
Sbjct: 1051 KSKGYNGRTSTWHLEDGSYLRLQNVTLGYTLPKNLTQCFFVEKLRVYVSGQNLWTSTNYS 1110

Query: 1011 GYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDL 1045
            GY+PEVN+  +  ++PG D+G YP ++ F FG+++
Sbjct: 1111 GYNPEVNARPSNSLSPGEDYGTYPLAKTFLFGLNI 1145