Pairwise Alignments

Query, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1001 a.a., TonB-linked outer membrane protein, SusC/RagA family from Bacteroides ovatus ATCC 8483

 Score =  572 bits (1475), Expect = e-167
 Identities = 362/1074 (33%), Positives = 560/1074 (52%), Gaps = 113/1074 (10%)

Query: 7    IKSISARGLFTLLALIMSISLHAQNATVKGVIVDETDTPLIGATVQVKGTATGSITDFDG 66
            I S S +  F +LA+ +S+S  AQ  T  G ++D    PLIG +VQ KGT+ G+ITD DG
Sbjct: 8    ILSGSRKIFFAILAMFLSLSASAQQFTASGQVLDAQKEPLIGVSVQEKGTSNGAITDLDG 67

Query: 67   NYTIKANKGAVITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRSDLT 126
            N+T+   + A++ FSY+GYK+QEIK   Q  + + +  DN+ LDEVVV+GYG++KR D+T
Sbjct: 68   NFTLNVKQNAILIFSYVGYKSQEIKAARQ--MKITLQEDNEVLDEVVVIGYGSVKRKDVT 125

Query: 127  GSVASIAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPL 186
             +++S++ KD++     S   A+ G+ AGV +   +GTPG   SI +RG  ++ G + PL
Sbjct: 126  TAISSVSTKDLDMRPIVSAGQAIQGKAAGVSVIQPNGTPGGEMSIRVRGTTSMNGSNDPL 185

Query: 187  YIVDGFEVDDIDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKSGKTGRPTITYN 246
            Y+VDG  VD+I +LS +DIES+++LKDASS++IYG+RAANGV+LITTK+G +G   ++  
Sbjct: 186  YVVDGVPVDNIKFLSPNDIESMQILKDASSASIYGSRAANGVILITTKAGASGNAKVSLT 245

Query: 247  GSASYRKISKKLDVLSPYEFVKLQGEVNSKYSDSYFKPGNDDNDIPYRYQSLDDYMGVKG 306
                  K++ K++ L+  ++ +LQ E+                       SL D +  + 
Sbjct: 246  AQFGLNKVADKVESLNSAQYKELQDEIG--------------------LVSLPDGLPDR- 284

Query: 307  VNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKL 366
             +W DET+    +Q++ +++  G +  KY  S     E G+   S + +   +  L+ ++
Sbjct: 285  TDWFDETYTTGKTQNYQVAVSNGNEKMKYYLSAGYLKEQGVLDISYYKRYNFRVNLENQV 344

Query: 367  SKSLSFNITVNYALTNRKG---VGTSADSGRFNMLAQILSARPTGGLKLTDDELLDSAID 423
             K L+ +  ++Y+     G   +GT A+ G       IL+   T       D L  +   
Sbjct: 345  RKWLTISANISYSDYTSNGGGAMGTGANRG-----GVILAVINTPTYAPVWDALNPNQYY 399

Query: 424  PEMLESGESLAQVNPVKQTESVTNTKRAE-MWSGNGSISWQIIKGLTFKTAGTYNTTNNR 482
                  G      NP++      N K  E     +G+I       L FK+  T +   N 
Sbjct: 400  NNFYGVGNI---TNPLENMARAKNNKDKENRLLASGNILLTPFPELKFKSTLTLD-RRNA 455

Query: 483  TNIFYKDGSKEAYRNGQKPYGRTQMGRDVRWTNFNNLTWKQKVKKHNYDVMLGHEVSFRS 542
             N  + D    A+   Q   G      +   T  N LT+ +  KKH  +VM G   S+  
Sbjct: 456  VNTTFLDPISTAWGRNQYGEGSDNRNMNTVLTFDNVLTYNKNFKKHGLEVMAGS--SWTD 513

Query: 543  TEY----------------LLGEAMDFPFDNLGNDYLGLGATPSKVESSYSEKMLLSFFA 586
            ++Y                 L  A    +DN G              +  S+  ++SFF 
Sbjct: 514  SDYSNSWINGSHYRSDLIQTLNAANKISWDNTG--------------TGASQWGIMSFFG 559

Query: 587  RGNYNYDNRYLLTATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKDVDWVSNFKVR 646
            R  YN+D++YLLTA +RADGS+     ++WG FPSFSAAWR+S E FM+++ W+ + K+R
Sbjct: 560  RVAYNFDSKYLLTANLRADGSSKLHPDHRWGVFPSFSAAWRISSEKFMENLTWIDDLKLR 619

Query: 647  LGWGIVGNDR-ISNYLSMDLYEA------SKYGVGN-----NTVTVLTPKQLKNANLKWE 694
             GWG  GN   I +Y  +  Y         K G G+     N V  ++   L+ ++L WE
Sbjct: 620  GGWGQTGNQSGIGDYAYLQRYNIGRIEWFKKGGEGDSTDYANAVPTISQANLRTSDLTWE 679

Query: 695  GSSTINLGVDLGFLDNRLNVTADFFVKNTKDLLLAQSL-AHVTGFDSQMQNIGKIQNKGI 753
             ++  N+G+DL  L+ RL   AD++ K TK++L+  SL A      S  +N G++ NKG 
Sbjct: 680  TTTQTNIGLDLTILNGRLTFNADYYYKKTKNMLMNVSLPAGAAAATSIARNEGEMVNKGF 739

Query: 754  ELSLNSTNIQTRDFSWQTNFNISFIKNTLKGLASGVESMYARSGFDSNFTAYDYIATVGQ 813
            ELS++S N++   F+W T+FNISF +N L  L   ++ +Y  +        Y      G+
Sbjct: 740  ELSISSKNLRGGAFTWDTDFNISFNRNKLTKLE--LQKVYYDAKTADVVNDYVVRNEPGR 797

Query: 814  SLGLIYGYEFDGVYQSSDFYTTPDNQLILKEGVTNNARYGTVKPGVVKYKDQDGDGIITT 873
            +LG  YGY  DGV                             + G + Y+D + DG I++
Sbjct: 798  ALGGFYGYISDGV---------------------------DPETGELMYRDLNNDGKISS 830

Query: 874  NDRTVIGNAMPKWFGGITNTFDYKGIDFSFMLQFNYGNDIYNATRLYSTQSRNGRRNMLA 933
            +DRT IG+  P +  G+TNTF +KG + S  +Q +YGNDIYNA+R+  T+     +N   
Sbjct: 831  SDRTYIGDPNPDFTYGMTNTFSWKGFNLSIFIQGSYGNDIYNASRI-ETEGMYDGKNQST 889

Query: 934  EVADRWSPTNTSNLVPSQDGYIVNDVYSRFIEDGSFLRLKNVTLGYTLPHKWTRKFHVSR 993
             V +RW        +P  +  ++N  Y  F+EDGS+LRLK+V+L Y    K  +K+ ++R
Sbjct: 890  RVLNRWKIPGQITDMPKANFKLLNSTY--FVEDGSYLRLKDVSLSYNFKGKLLKKWGITR 947

Query: 994  LRLYATGQNLFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDLQF 1047
            L+ Y T  NL   + YSG DPEVN   N+    G+DWG YP  R + FGI+++F
Sbjct: 948  LQPYFTATNLLTWTSYSGMDPEVNQWGNSGTVQGIDWGTYPHCRSYVFGINVEF 1001