Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 543 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  121 bits (303), Expect = 8e-32
 Identities = 152/593 (25%), Positives = 246/593 (41%), Gaps = 87/593 (14%)

Query: 1   MKKIIYYIAMSVMC--LLPFSCS----LEEETRTEVEKKNYMNNAEEAKDVLLGVYRTNT 54
           MKK+  Y  M   C  LL   C       E T T++    Y  +A +A+ +L      NT
Sbjct: 1   MKKLTNYTIMISACCTLLWTGCKDLDLAPENTFTDL---TYWTSAAKAESML------NT 51

Query: 55  LDAMYGYYLSILFNLGTDISQVEGSG-NENFRIIPTNSFPTTQSEVQQTWAALYTGIYRA 113
             +         +N G   +   G G N     +   ++  +   +Q  W   Y+ I   
Sbjct: 52  AYSQMFSSNRFFYNEGASDNAYNGRGDNAGAASLAAGTYDPSLGRLQSQWDNNYSAIKTC 111

Query: 114 NDFLERISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNP 173
           N  LE I          D+       AEAR +R   +F+L+  FG+V L+    +S ++ 
Sbjct: 112 NILLENIDR----VEDIDEGERERMKAEARFIRAYQHFQLMTWFGDVPLLDQ-DISIEDA 166

Query: 174 ATYVQSAPEKVYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAG 233
            T  ++   +V E+I  +L  A ++LP  T  +  E+   R + GAA+ L  +V+     
Sbjct: 167 QTISRTPKSQVLEFILSELEAASEVLP--TQQELPEAERGRITSGAAMALKARVHLY--- 221

Query: 234 YPVKDESKWEAAAKTARILV---ESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSP 290
                E +W+    T   L+   E G +GL   YE L+      +    E ++ + +   
Sbjct: 222 -----EGQWQEVVATTEPLIMGNEYGNYGLFPAYEGLFMPENQYS---QEDILSLQY--- 270

Query: 291 TVSGNSDPVGRIGKWNGVKTTA--IAGVR-GSCAANVKVVHTFVLDWREDVSDIR----- 342
                   V ++  W      A   AG R  + A   ++V +++++    ++D       
Sbjct: 271 --------VPQLRTWGEFFDMAPLSAGARLNALAPTQELVDSYLMENGLPITDSNAGYDE 322

Query: 343 ------RDLSIAN------YQYTDT--KKSLWVAGASDTDESAAEKDADPTKAQKNKQNY 388
                 RD  +        Y++ D     ++++   +D DESAA++   P  +      Y
Sbjct: 323 NDPYDHRDPRLTATIVYHLYEWEDNGDTHTIYIKPGTDPDESAADEYV-PGSSSTTTGYY 381

Query: 389 TPAKWDIQKYVTTNSFINND-KSNVNWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINA 447
           T   +D  +        N D  S +N   LRYADVLL+YAEA NE      A     I A
Sbjct: 382 TRKYFDPSR--------NTDFASGLNLMLLRYADVLLMYAEAKNELNQMDQATWDQTIRA 433

Query: 448 VRRR-GYGNPSNTSACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQ 506
           +R R G+  P   +A D    L +   RE +R ER  EL+ EG R  D+ RW I    + 
Sbjct: 434 LRERAGFEAP---AALDFDADLGQDGLREVIRNERRVELAMEGLRVFDIRRWRIAEDVLN 490

Query: 507 --ATAKELGYWWEGTGSPNYSVATYTEEGKHELFPIPQRDMDLCIQFNQNPKW 557
             A   + G   E  G    ++ ++ +  KH L+PIP+ + +L     QNP W
Sbjct: 491 GWAHGAQFGPPSEDNGYLRVNLRSF-DPAKHYLWPIPRDERNLNPNLTQNPGW 542