Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 539 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 98.2 bits (243), Expect = 7e-25
 Identities = 141/565 (24%), Positives = 229/565 (40%), Gaps = 96/565 (16%)

Query: 19  SCSLEEETRTEVEKKNYMNNAEEAKDVLLGVYRT-NTLDAMYGYYLSILFNLGTDISQVE 77
           SCSL+EE  +    +++ +N +E    L GVYR    +  M   Y ++   L  D   V 
Sbjct: 40  SCSLDEEVYSIYTPESFYSNEKEVLSSLSGVYRNFAQITGMGAEYRTL--ELSADQVVVH 97

Query: 78  GS-----GNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRANDFLERISNKIGSYTTTDK 132
           G       N +F  +  + +  + + +  TW  L+  + +AN  ++ + +  G       
Sbjct: 98  GKIQGWWANNDFEQLMEHKWDASHAYIAGTWNTLFGTVGQANALIDAL-DASGLEGIEGP 156

Query: 133 KLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQSAPEKVYEYIEDDL 192
           +      AE +ALR   YF LV  +GNV + T+ ++   +  T  Q+   +V ++I  +L
Sbjct: 157 R------AELQALRAFAYFYLVDLYGNVPIFTAPKVDPLDLPT--QNTRAEVVDFIIAEL 208

Query: 193 LYACDILPYATDDQYRESNDY--RFSKGAALGLLTKVYATWAGYPVKDESKWEAAAKTAR 250
             A   LP  T+      ++Y  RF++ A   LL  +Y     Y     ++W+ A + A 
Sbjct: 209 ETALPNLPSQTE----VGSEYYGRFTREAGYTLLATLYLNAEVY--TGTAQWDKALEYAD 262

Query: 251 ILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSPTVSGNSDPVGRIGKWNGVKT 310
           +++ SG + LL DY   + N  +   +  E +     Y+P + G        G  + +  
Sbjct: 263 MVINSGAYQLLPDY---FDNFVHDNEENAEFIFG-GIYTPNIPG--------GIGHPLVQ 310

Query: 311 TAIAGVRGS------CAANVKVVHTFVLDWREDVSDIRR--------------DLSIANY 350
             + G+ G          N       V +  ED  D +               ++ +   
Sbjct: 311 KVLPGISGGLFGLPYTPQNGFGTRPSVYEIYEDRDDRKSMFLAYGPMKDPRTGEVVMVER 370

Query: 351 QYTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSFINNDKS 410
              D   +L+  GAS   E     +  P    +N+      KW I+  +  N+  N   +
Sbjct: 371 IVPDNNSNLYREGAS--SEGPVPYEIIPATGIRNQPMNAGIKW-IKWGLDPNT--NGGNA 425

Query: 411 NVNWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNTSACDLPQGLDE 470
           + +  F RYADVLL+ AEAL   + G   EA   +N VR+R   N S  S   L   LD 
Sbjct: 426 SNDIAFFRYADVLLIKAEALA--RMGNFGEATALVNQVRQR--SNASTLSTITLEDILD- 480

Query: 471 TSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEGTGSPNYSVATYT 530
                    ER  EL+FE  RR+DLIR+G + +            WE             
Sbjct: 481 ---------ERGRELAFELARRRDLIRFGKFNEA-----------WE---------FKEA 511

Query: 531 EEGKHELFPIPQRDMDLCIQFNQNP 555
            E    L+PIP   +D      QNP
Sbjct: 512 SEPFRTLYPIPSTAIDANPNLQQNP 536