Pairwise Alignments

Query, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 504 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  102 bits (253), Expect = 5e-26
 Identities = 139/573 (24%), Positives = 229/573 (39%), Gaps = 95/573 (16%)

Query: 2   KKIIYYIAMSVMCLLPFSCSLEEETRTEVEKKNYMNNAEEAKDVLLGVYRTNTLDAMYGY 61
           K  I  + ++   ++     L++   + +    +  N  +    L G Y  N L+A    
Sbjct: 6   KLYITLLGLATGAMVSCESKLDQSPISSIGSNAFYQNESDFIKGLTGAY--NGLNAYPIN 63

Query: 62  YLSILFNLGTDISQVEGSGNENFRIIPTNSFPT---TQSEVQQTWAALYTGIYRANDFLE 118
           +  +      +I     +G  ++ +I  N+F T   T   +  TW  LY  I RAN  L+
Sbjct: 64  HFELSEVRSDNIYSPGTAGVRDYNLI--NNFNTNLATAGIMNSTWNGLYNNIMRANTILD 121

Query: 119 RISNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQ 178
            IS  +      D+ + +   AEA+ LRG++YF+L+R +G V L     ++        +
Sbjct: 122 NISPDV----LPDEAMRSRIEAEAKFLRGLYYFDLIRFYGKVPLF-DRPVTPLEALEIPR 176

Query: 179 SAPEKVYEYIEDDLLYACDILPYATDDQYRESNDY-RFSKGAALGLLTKVYATWAGY--- 234
           S    VY  I  DL +A D LP    D+Y  + D  R +  AA GLL +VY T +G    
Sbjct: 177 SPVADVYGLIIADLEFAIDNLP----DEYTSAGDLGRATSHAARGLLARVYMTRSGTQLH 232

Query: 235 ---PVKDESKWEAAAKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSPT 291
              PV   ++W  A      ++ SG+  L+ DY  ++        +  E + +I F S  
Sbjct: 233 PDGPVLGTNEWSEALTLLNEIINSGQFDLVDDYADIF---AYDNENNEEIIFDIQFLSGG 289

Query: 292 VSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWREDVSDIRRDLSIANYQ 351
           +    + V         ++  I    G+     K V   ++   E V D+R D S+    
Sbjct: 290 LGVGGEYVQYHYPEAFARSNGIPFAGGTFPDAPKTVSADLMASYESV-DVRDDFSV---- 344

Query: 352 YTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWD------IQKYVTTNSF- 404
                   WV                         NYT A  +      I+KY+  ++  
Sbjct: 345 --------WV-------------------------NYTDANGNTVQDRFIKKYLDLDNLG 371

Query: 405 INNDKSNVNWYFLRYADVLLLYAEALNEWKHGPDAEAYNAINAVR-RRGYGNPSNTSACD 463
           ++     +N+  +RYAD+LL+ AEAL++   G   E    +N +R R G   P +    D
Sbjct: 372 VDRFDFELNYPVIRYADILLMKAEALSK-SGGSQTEIDEIVNEIRGRAGISTPISNVTYD 430

Query: 464 LPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEGTGSPN 523
                        + +ER  E   EG R  DL+R G+        A ++   W  T    
Sbjct: 431 ------------QIMEERRREFIGEGLRWHDLVRSGM--------AIDVMLDWIATDDSG 470

Query: 524 YSVAT-YTEEGKHELFPIPQRDMDLCIQFNQNP 555
             ++T  T +      PI Q D+   + + QNP
Sbjct: 471 NKISTDITSDDMIYAVPINQLDVKEGL-YEQNP 502