Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 94.0 bits (232), Expect = 1e-24
 Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 3/177 (1%)

Query: 6   LILTKIKAGDIKAFEELFRCYYSPLCWYAASITGRMEVAEEIVEELFYVLWKDREQLQIF 65
           L L++I+ G +KAFE LFR YY+ LC Y        + AEEIV++    +W++RE L I 
Sbjct: 11  LQLSEIQRGGLKAFETLFRQYYAVLCAYGHKYVDFHD-AEEIVQDSLLWIWENRENLIIE 69

Query: 66  QSVKNYLYRATRNQSIQYCEHEEVKERYRESVLTASSSEQVTDPHQQMEYEELQKLINNT 125
            S+ +YL++   ++++    H +  +R  ++       E + D     + +EL K I + 
Sbjct: 70  SSLSSYLFKMVHHKALNKLAHIDAIKR-ADTRFYEEMQEMIHDM-DFYQIKELTKRIEDA 127

Query: 126 LEKLPERRMQIFKMHRTEGKKYAEIAVQLSLSVKTVEAEMTKTLRTLRKEIENYIQM 182
           +  LPE   Q F MHR     Y EIA  L +S KTV+  + + L+ LR ++++Y+ +
Sbjct: 128 VAALPESYRQAFVMHRFRDMSYKEIAETLEVSPKTVDYRIQQALKQLRIDLKDYLPL 184



 Score = 22.3 bits (46), Expect = 0.005
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 2   LNELLILTKIKAGDIKAFEELFRCYYSPLCWYAASITGRMEVAEEIVEELF 52
           LN+L  +  IK  D + +EE+    +    +    +T R+E A   + E +
Sbjct: 85  LNKLAHIDAIKRADTRFYEEMQEMIHDMDFYQIKELTKRIEDAVAALPESY 135