Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 181 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 89.0 bits (219), Expect = 4e-23
 Identities = 50/179 (27%), Positives = 94/179 (52%), Gaps = 2/179 (1%)

Query: 2   LNELLILTKIKAGDIKAFEELFRCYYSPLCWYAASITGRMEVAEEIVEELFYVLWKDREQ 61
           + E +IL K+KAGD  AF  L+  Y+  +  +A        V  E+V+++F  +W+ +E 
Sbjct: 1   MEETIILEKVKAGDAAAFSLLYDLYWLKVYNFARLYITSSSVISEVVQDVFVKVWESKEF 60

Query: 62  LQIFQSVKNYLYRATRNQSIQYCEHEEVKERYRESVLTASSSEQVTDPHQQMEYEELQKL 121
           L I ++    L+  TRN    Y      +  ++ +VL     E   D  ++++  +L+  
Sbjct: 61  LDITKNFDGLLFMITRNIIFNYSRRHFNELNFKMTVL--KGLENSYDIEEELDAADLKNY 118

Query: 122 INNTLEKLPERRMQIFKMHRTEGKKYAEIAVQLSLSVKTVEAEMTKTLRTLRKEIENYI 180
           I+  + +LP RR QIF+M R E     EIA + ++S K +E ++T  L+ +++ +  ++
Sbjct: 119 IDKLISQLPARRQQIFRMSREEHLSNREIAERCAVSEKAIERQITLALKFIKENLPLFV 177