Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 86.7 bits (213), Expect = 2e-22
 Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 3/179 (1%)

Query: 2   LNELLILTKIKAGDIKAFEELFRCYYSPLCWYAASITGRMEVAEEIVEELFYVLWKDREQ 61
           +NE   +  IK GD +AF +L+  Y+S +  ++      +  AEEIV+++F  LW+ R  
Sbjct: 1   MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHL 60

Query: 62  LQIFQSVKNYLYRATRNQSIQYCEHEEVKERYRESVLTASSSE---QVTDPHQQMEYEEL 118
           L+  +++K +L+  TRN      +    +  ++ SVL A  +E     T   +     +L
Sbjct: 61  LKEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQL 120

Query: 119 QKLINNTLEKLPERRMQIFKMHRTEGKKYAEIAVQLSLSVKTVEAEMTKTLRTLRKEIE 177
           +  I+  +  LPE++ + F + R E   Y EIA +L +S KTVE  M K L+ L+ +++
Sbjct: 121 KIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVK 179