Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 187 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 92.0 bits (227), Expect = 5e-24
 Identities = 49/173 (28%), Positives = 91/173 (52%), Gaps = 1/173 (0%)

Query: 3   NELLILTKIKAGDIKAFEELFRCYYSPLCWYAASITGRMEVAEEIVEELFYVLWKDREQL 62
           +E  +L  I  GD KAF+  F  YY  +  +   +    E AE++ +++F  LW +R  L
Sbjct: 5   DEKQLLKAISEGDEKAFKTFFLYYYPRIKGFINGLLQSQEEAEDLSQDIFLTLWNNRSSL 64

Query: 63  QIFQSVKNYLYRATRNQSIQYCEHEEVKERYRESVLTA-SSSEQVTDPHQQMEYEELQKL 121
               ++K YL+R ++N   ++ E   +   Y++      S  ++  +    +  +EL+ L
Sbjct: 65  HTINNLKPYLFRISKNAVYRHIERALLFRNYQQKETEKYSPPQESNETDDTIHLKELELL 124

Query: 122 INNTLEKLPERRMQIFKMHRTEGKKYAEIAVQLSLSVKTVEAEMTKTLRTLRK 174
           +   +EK+P +R +I+KM R  G    EIA +L ++ +TVE  +++ L  +RK
Sbjct: 125 VTMVVEKMPPQRQKIYKMSRESGMNNEEIARELGINKRTVENHLSQALTDIRK 177