Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 200 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 85.1 bits (209), Expect = 7e-22
 Identities = 45/179 (25%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 1   MLNELLILTKIKAGDIKAFEELFRCYYSPLCWYAASITGRMEVAEEIVEELFYVLWKDRE 60
           +++E  ++ ++  GD  AF EL+  Y + L ++A       E AE+I ++ F V+W+ R 
Sbjct: 7   LMDERELVLRLIDGDEDAFCELYAAYKNRLLYFAMKFVKSREFAEDIFQDAFTVVWQSRR 66

Query: 61  QLQIFQSVKNYLYRATRNQSIQYCEHEEVKERYRESVLTASSSEQVTDPHQQMEYEELQK 120
            +    S  +YLY   RN+ +        +++ +E +L + + +   + + ++ +++L+ 
Sbjct: 67  FINPDASFSSYLYTIVRNRILNQIRDMANEDKLKEHIL-SHAVDSANETNNKILFDDLKD 125

Query: 121 LINNTLEKLPERRMQIFKMHRTEGKKYAEIAVQLSLSVKTVEAEMTKTLRTLRKEIENY 179
           +++  LE+L  R+ ++F M R     + EIA  L +SV TV+  ++ +L+ +R  +  Y
Sbjct: 126 VLSRALEQLTPRQREVFNMSRDLQMSHKEIAEALGVSVNTVQEHISVSLKVIRAYLTKY 184