Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 207 a.a., RNA polymerase sigma factor RpoE from Rhodanobacter sp. FW510-T8

 Score = 90.1 bits (222), Expect = 2e-23
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 9   LVSRSQQDDKRAFALLVSEFQPLVFRLAFRLLCDEEEARDITQETFVKVWLSLKTYNQEN 68
           LV R QQ DKRAF LLV ++Q  V  L  R + +  E  DI QE+F++ W ++ ++  ++
Sbjct: 20  LVERVQQGDKRAFDLLVRKYQHKVIGLVSRYVRNHAECEDIAQESFIRAWRAIGSFRGDS 79

Query: 69  RLSTWLYKITCNTCYDRLRSLRHSPLDNESAFSDSVNIPSDDHI------EISLSNKQLK 122
              TWLYKI  NT  + L +L   P   +    D+  +   + +      E  L  ++++
Sbjct: 80  AFYTWLYKIAVNTAKNHLVALGRRPPSGDIDADDAEFMAGAERMHDSATPERELMRQEIE 139

Query: 123 ELILRYTNELPPQQKLVFTLRDVEELEVAEVQIITGLSPEKIKSTLYLARKNIRNKMNQI 182
           + +      LP + +   TLR+V+ L   E+    G     ++S ++ AR+ I  K+  +
Sbjct: 140 QSVFSTVQSLPEELRTAITLREVDGLSYDEIAEAMGCPIGTVRSRIFRAREAIDEKLRPL 199

Query: 183 DPD 185
             D
Sbjct: 200 LSD 202