Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., ECF RNA polymerase sigma-E factor from Escherichia fergusonii Becca

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 7/182 (3%)

Query: 7   QELVSRSQQDDKRAFALLVSEFQPLVFRLAFRLLCDEEEARDITQETFVKVWLSLKTYNQ 66
           Q LV R Q+ D++AF LLV  +Q  V  L  R +    +  D+ QE F+K + +L ++  
Sbjct: 8   QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSFRG 66

Query: 67  ENRLSTWLYKITCNTCYDRLRSLRHSPLDNESAFSDSVNIPSDDHI-EIS-----LSNKQ 120
           ++   TWLY+I  NT  + L +    P  ++    ++ N  S   + EIS     + +++
Sbjct: 67  DSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEE 126

Query: 121 LKELILRYTNELPPQQKLVFTLRDVEELEVAEVQIITGLSPEKIKSTLYLARKNIRNKMN 180
           L++++ R    LP   ++  TLR+++ L   E+  I       ++S ++ AR+ I NK+ 
Sbjct: 127 LRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 186

Query: 181 QI 182
            +
Sbjct: 187 PL 188