Pairwise Alignments

Query, 372 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 380 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  176 bits (447), Expect = 7e-49
 Identities = 118/370 (31%), Positives = 177/370 (47%), Gaps = 11/370 (2%)

Query: 7   VTLRTRPLKKNMLSFYLDYYPGYRDKESMKVIR---HESLGIYIYAEPKNQREQNFNAVM 63
           ++L+ + L+   LS +++YY G    E  K I     E L IY++  P + RE+  N   
Sbjct: 3   ISLKKKKLQNGKLSLFIEYYKGSTTDEKGKRIHLRDFEFLKIYLHQNPNSAREKKENKES 62

Query: 64  SEKAEAIRCRRFESIVNERYDFFDKSKMKGDFLAYYKKTLR------KHDQKWEFVYLHF 117
              AE I   R    +  ++D  + SK K  FL +YK+ +       K+   W   ++H 
Sbjct: 63  LHLAENILAIRQSDYIQGKFDVKNISKSKRPFLDFYKEKMEEKANSEKNYGVWTSAFVHL 122

Query: 118 FNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRN 177
            N V     F+E+D     + R Y  + K   + + P+S NS   Y++ F+  L+  +  
Sbjct: 123 KNCVSSNFLFDEVDDSFTKRVRRYF-DEKARTKSDLPLSMNSKYSYFNKFKACLRSAFDE 181

Query: 178 KLIHSNVNDFLDKIEPEDVVKDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDIL 237
             ++ N    +   E  +  ++YL+  EL  L  T CK  VLK A LFSCLT LR SDI 
Sbjct: 182 GYLNINYAARVKSFEQAESQREYLTFSELQALTNTQCKYKVLKKAFLFSCLTGLRWSDIN 241

Query: 238 TLRWEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEALQLIGYSPEKTGLVFKGLK-RCWT 296
            L W E+ D       V+   +KT   + + IS +A  L+G        VF GLK     
Sbjct: 242 NLTWSEVRDEDDNTFRVNFRQKKTDGVEYLYISKQARDLLGERQTPHDRVFYGLKYSAVY 301

Query: 297 QYPMKEWIRAAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVD 356
              +  W   AG+ K+ITFHS R T A L    G D+ T+Q  + HK I TT  Y K+VD
Sbjct: 302 NNEIVRWCNRAGVFKHITFHSARHTNAVLLLENGADLYTVQKRLGHKEIKTTAIYAKIVD 361

Query: 357 SNKRKASNKI 366
              R++++ I
Sbjct: 362 EKMRESAHII 371