Pairwise Alignments

Query, 372 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 228 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 68.6 bits (166), Expect = 2e-16
 Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 196 VVKDYLSVDELYRLAETPCKIPVLKTAS---LFSCLTSLRISDILTLRWEEIVDFAAGGK 252
           V +D+L+ +EL  +     KI  L+      +FSC T L   D + L    I     G  
Sbjct: 35  VDRDFLNHEELEAVENKDFKIVRLQWVRDLFVFSCYTGLAYIDAMNLTPSNITIGIDGEY 94

Query: 253 CVHTVTQKTKTEDIIPISDEALQLIG-YSPE----KTGLVFKGLKRCWTQYPMKEWIRAA 307
            + T  QKT     +PI  +A ++I  Y       + G VF  +        +KE     
Sbjct: 95  WLSTCRQKTDQPVRVPILPKAWEIIEKYRTHPRALQKGSVFPMISNQKLNSYLKEIADLC 154

Query: 308 GITKNITFHSYRRTFAT-LQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRK 361
           GI KN+TFH  R TFAT +    G  + T+  ++ H  ITTTQ Y KVV+   R+
Sbjct: 155 GIEKNLTFHLARHTFATTVTLCNGVPLETVSKMLGHSKITTTQVYAKVVEKKVRE 209