Pairwise Alignments

Query, 372 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 437 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 71.6 bits (174), Expect = 4e-17
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 49/317 (15%)

Query: 83  YDFFDKS-------KMKGDFLAYYKKTLRKHDQKWEFVYLHFFNFVGGKCSFEEIDVDLC 135
           YDF D+        + KG  + Y  K+LRKH +       +F      K  FE +D    
Sbjct: 133 YDFIDQYIQDNELIRAKGSLVVY--KSLRKHLK-------NFQKKSRKKIRFENMDYIFM 183

Query: 136 NKFREYLLNAKQLRRPERPIS--RNSAVG-YWSTFRGFLKILYRNKL-IHSNVNDFLDKI 191
             F+ YL+  K++      ++   N ++G   ST + FL    R  + +H    +F  K 
Sbjct: 184 QAFQNYLVGWKEVNNKTGRVTTLNNVSIGKQLSTLKTFLSYARRRGIKVHDGYKEFTIKK 243

Query: 192 EPEDVVK-DYLSVDELYRLAETPCK-IPVLKTASLFSCLTSLRISDILTLRWEEIVDFAA 249
           E  +V+  +    D LY L     K +  +K   +FSC T  R SD+  LR E I     
Sbjct: 244 ERLEVIALNQREFDALYNLDLGKHKRLQQVKDIFIFSCATGYRYSDLRQLRREHI----K 299

Query: 250 GGKCVHTVTQKTKTEDIIPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGI 309
           G +   T+T KTK   ++P++  + +++    E+   +     + +  Y +KE  + AGI
Sbjct: 300 GDEIRLTIT-KTKEPSVVPLNRYSREILAKYEERVEPLPIISNQKFNNY-VKELCKLAGI 357

Query: 310 TKN---------------------ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTT 348
            +                      I+ H+ R+TF TL  A G     +  I  H    + 
Sbjct: 358 DEPVEIIRYRGAKRDAKVFPKYELISAHTGRKTFVTLSLAKGIPAEVVMKITGHSDYKSF 417

Query: 349 QRYMKVVDSNKRKASNK 365
           +RY++V +  KR    K
Sbjct: 418 KRYIEVDEQRKRDEMTK 434