Pairwise Alignments

Query, 190 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas sp. S08-1

 Score = 61.2 bits (147), Expect = 1e-14
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 13  DEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQMFEDLLPKIINY 72
           D++ L   ++ GD   F  L  +Y     GL ++++ D  +AQ+   + F      + N+
Sbjct: 6   DDQQLVERVQRGDKRAFDLLVLKYQHKILGLVVRFVHDSHEAQDVAQEAFIKAYRALGNF 65

Query: 73  E-IKAFKPWLYRVAKNHCLQLLRKENKEIPLDYTINIMESDEFL---HLLSEEESSEEQL 128
               AF  WLYR+A N     L    +  P D  ++  E  EF    H L + ES E  +
Sbjct: 66  RGDSAFYTWLYRIAINTAKNYLVSRGRRPP-DSDVS-SEDAEFYDGDHALKDIESPERAM 123

Query: 129 ------KALHHCLEKLPEEQRTSITRFFLEEMSYADIVEQTGFTLNNVKSYI 174
                   +H  +++LPE+ RT++T    + +SY DI       +  V+S I
Sbjct: 124 LRDEIEATVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRI 175