Pairwise Alignments

Query, 190 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 204 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 69.7 bits (169), Expect = 3e-17
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 10/189 (5%)

Query: 5   VRNISKLSDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQMFED 64
           +R + K +++ L+   ++ GD   F ELY+RY P  YG   +   D+D A+EAV  +F  
Sbjct: 8   MRKLIKYTEKRLVA-LVREGDLNAFDELYHRYAPRVYGFAKRVFHDKDVAEEAVQVVFVK 66

Query: 65  LLPKI--INYEIKAFKPWLYRVAKNHCLQLLRKENKEIPLD--YTINIMESDEFLHLLSE 120
           L  K   +N ++  FK +L+   K+     LR+    + L+   T +  +    L +L  
Sbjct: 67  LWEKRKGLNEQLN-FKSYLFTAVKHQVYNRLREVKNTVDLEEMVTDHTYQGVSGLEVLEY 125

Query: 121 EESSEEQLKALHHCLEKLPEEQRTSITRFFLEEMSYADIVEQTGFTLNNVKSYIQNGKRN 180
           +E  E  L      +E+LP  Q+       LE +S+ +I E+ G ++  V+ +     + 
Sbjct: 126 KEFEESAL----GLIERLPNVQQKVFKLSRLEGVSHKEIAEKLGLSVRTVEHHCYLATKF 181

Query: 181 LKICIKKQA 189
           LK  + KQA
Sbjct: 182 LKGQLLKQA 190