Pairwise Alignments

Query, 190 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 203 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 1   MLFNVRNISK--LSDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAV 58
           M  N R  S   L D +L+   +   D + +  L  RY    Y + LK ++D D A++  
Sbjct: 1   MEINERGFSDKALEDFDLIDQAVDQKDQQAYATLMKRYKKAVYFMILKMIRDADDAEDLT 60

Query: 59  MQMFEDLLPKIINYEIK-AFKPWLYRVAKNHCLQLLRKEN-KEIPLDYT--------INI 108
           M+ F      +  ++    F  WL+R+A N+ +  +RK+  K + L+ T        +NI
Sbjct: 61  MEAFAKAFRNLHKFKKDYTFSTWLFRIATNNTIDFIRKKKLKTMSLNNTLTDDGGNSVNI 120

Query: 109 -MESDEFLHLLSEEESSEEQLKALHHCLEKLPEEQRTSITRFFLEEMSYADIVEQTGFTL 167
            +E D+  +   +E    ++++ +   ++KLP + R  +   + +E+SY +I ++    L
Sbjct: 121 DVEDDD--NNPQDEFIKSQRIEMVRIFVDKLPAKYRKLVKLRYFDELSYDEIAQELDKPL 178

Query: 168 NNVKSYIQNGKRNL 181
             VK+ +   +  L
Sbjct: 179 GTVKAQLHRSRELL 192