Pairwise Alignments

Query, 190 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 206 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score = 77.4 bits (189), Expect = 2e-19
 Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 12  SDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQMFEDLLPKIIN 71
           +D+E L   I+ GD   F + Y RY  L Y L  +YL   D A++ V  +F  L      
Sbjct: 11  TDDEKLFALIEQGDEGAFTQAYERYHKLLYVLAYRYLMSSDMAEDVVQHVFSRLWE--FR 68

Query: 72  YEIK---AFKPWLYRVAKNHCLQLLRKENKEIPLDYTINIMESDEFLHLLSEEESSEEQL 128
            E++   + K +L+ + KNH L L+R EN  I  +Y +    +  +   L E+   +E +
Sbjct: 69  SELRVGISLKNYLFTMTKNHVLNLIRNENSAIAKNYEM-AQAASPYEDNLIEKLEKKELM 127

Query: 129 KALHHCLEKLPEEQRTSITRFFLEEMSYADIVEQTGFTLNNVKSYIQNGKRNLKICIKKQ 188
            + +  ++ LP ++R        EE++  +I E+   ++N +K++     + L+I + K 
Sbjct: 128 SSFYKAVDMLPAQKRDICLMKVQEELTNQEIAERMNLSVNTIKTHYSEALKLLRIHLSKM 187

Query: 189 AL 190
            +
Sbjct: 188 LI 189