Pairwise Alignments

Query, 353 a.a., DNA damage-inducible protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 351 a.a., DNA polymerase IV from Escherichia coli BL21

 Score =  233 bits (593), Expect = 7e-66
 Identities = 136/294 (46%), Positives = 181/294 (61%), Gaps = 7/294 (2%)

Query: 1   MDAFYASVEQRDHPELRGKPLAVGHAEER-GVVAAASYEARRYGVRSAMSSQKAKRLCPQ 59
           MD F+A+VE RD+P LR  P+A+G + ER GV++ A+Y AR++GVRSAM +  A +LCP 
Sbjct: 9   MDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPH 68

Query: 60  LIFVSGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKGISLAVDIAKEIKL 119
           L  + GR D YK  S  I EIF  YT  IEPLSLDEA+LDVT++      A  IA+EI+ 
Sbjct: 69  LTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQ 128

Query: 120 RIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFIAGLPIESFWGVGPVT 179
            I  +L L ASAGV+  KFLAKIASD  KP+G   I P +   F+  LP+    GVG V+
Sbjct: 129 TIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVS 188

Query: 180 AKKMHLLGIHNGLQLRKCSLEMLTAHFGKVGALYYECSRGIDERPVEAVRIRKSIGCERT 239
           A K+  +G+     ++KC L ML   FGK G + +E S+GIDER V + R+RKS+G ERT
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERT 248

Query: 240 LERDISVHSSVIIELYHVAVELIERLQRKEFKGNTLT----LKIKFHDFSQITR 289
           +  DI   S     +  +  EL  RL +   K + L     +K+KF DF Q T+
Sbjct: 249 MAEDIHHWSECEAIIERLYPELERRLAK--VKPDLLIARQGVKLKFDDFQQTTQ 300