Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 182 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  186 bits (471), Expect = 3e-52
 Identities = 87/176 (49%), Positives = 128/176 (72%)

Query: 1   MTPYNEREVLKLLQEESTQRKGFELIVAQYSEQLYWQIRRMVLSHEDANDLLQNTFIKAW 60
           M   ++  +LKL+    T+ KG+ ++V  Y +++Y  IR+MV+ HEDA+DL+QNTF+KA+
Sbjct: 1   MNLLDDTSLLKLINNPQTREKGYRMLVNHYQKRIYSIIRKMVIIHEDADDLVQNTFVKAF 60

Query: 61  TNIDYFRAEAKLSTWLYRIALNECLTFLNRQRATTTVAIDDPEAAIVQKLESDPYYSGDQ 120
            NI+ F+ ++ L TWLYRIA+NECL FL +++      ++D E  +   L+S  +  GD+
Sbjct: 61  KNINNFKRDSSLFTWLYRIAINECLNFLEKKKKRNFFRLEDHEHKMAGYLDSTLHIEGDE 120

Query: 121 VQMLLQKALLTLPEKQRMVFNLKYYQEMKYEEMSEIFGTSVGALKASYHHAVKKIE 176
           +Q+LLQK LL LP+KQR+VFN+KY++ + Y ++SEI  TS GALKASYHHAVKKIE
Sbjct: 121 IQLLLQKLLLKLPKKQRLVFNMKYFENLSYAQISEITKTSEGALKASYHHAVKKIE 176