Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 203 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 78.2 bits (191), Expect = 9e-20
 Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 17/169 (10%)

Query: 16  ESTQRKGFELIVAQYSEQLYWQIRRMVLSHEDANDLLQNTFIKAWTNIDYFRAEAKLSTW 75
           +   ++ +  ++ +Y + +Y+ I +M+   +DA DL    F KA+ N+  F+ +   STW
Sbjct: 24  DQKDQQAYATLMKRYKKAVYFMILKMIRDADDAEDLTMEAFAKAFRNLHKFKKDYTFSTW 83

Query: 76  LYRIALNECLTFLNRQRATT----TVAIDDPEAAIVQKLESDPYYSGDQ---------VQ 122
           L+RIA N  + F+ +++  T        DD   ++   +E D     D+         V+
Sbjct: 84  LFRIATNNTIDFIRKKKLKTMSLNNTLTDDGGNSVNIDVEDDDNNPQDEFIKSQRIEMVR 143

Query: 123 MLLQKALLTLPEKQRMVFNLKYYQEMKYEEMSEIFGTSVGALKASYHHA 171
           + + K    LP K R +  L+Y+ E+ Y+E+++     +G +KA  H +
Sbjct: 144 IFVDK----LPAKYRKLVKLRYFDELSYDEIAQELDKPLGTVKAQLHRS 188