Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1833 a.a., DNA helicase from Ralstonia solanacearum UW163

 Score =  225 bits (573), Expect = 4e-62
 Identities = 142/375 (37%), Positives = 212/375 (56%), Gaps = 54/375 (14%)

Query: 1271 LQKNIRNNARGISIRKLFD-QIPTLLSRMCPCMLMSPISVAQYIDTDADKFDLIVFDEAS 1329
            L+     + R  SIR L D +   +++ + P  LMSP+SV+  +    D FD+++FDEAS
Sbjct: 1221 LEHEFSKSMRHRSIRDLSDDETGLVINDLKPIWLMSPLSVSDTLPLSPDLFDVVIFDEAS 1280

Query: 1330 QMPTYEAVGAIARGKNVVIVGDPKQMPPTSFFSVN--------TIDEDNIEME---DLES 1378
            Q+PT EAV A++R + VV+VGD  Q+PPTSFFS +         ++ED   +    D +S
Sbjct: 1281 QIPTEEAVPALSRARQVVVVGDEMQLPPTSFFSASGTEGDEAIVVEEDGERIAINLDSDS 1340

Query: 1379 ILDDCLALSIPSKYLLWHYRSKHESLIAFSNSEYYDNKLMTFPSP-----DNIESKVR-- 1431
            +L+   A ++P+  L WHYRS+HESLI+FSN+ +YD +L+T P       ++  + +R  
Sbjct: 1341 LLNQA-ARNLPATLLAWHYRSRHESLISFSNAAFYDGRLVTIPDRTLEQIEDAAAPIRSD 1399

Query: 1432 -----MVAVDGYYDKGKS-----------RQNQAEAQAVVDEIARRLRSEELRKKSVGVV 1475
                 +V+ D    +  S           R+N+ EA+ +   +   LR E     S+G+V
Sbjct: 1400 QGDAGIVSADALLKRPVSFHQVSDGVYADRRNEPEARYIAQTVRELLRRET--GLSLGIV 1457

Query: 1476 TFSVVQQALIEDLLSDLFIFHPELETFALECEEP-----------LFIKNLENVQGDERD 1524
             FS  QQ  IE  L  L     E   FA+  E             LF+KNLENVQGDERD
Sbjct: 1458 AFSEAQQTAIESALEALAA---EDADFAMRLEREYVREDDDQFNGLFVKNLENVQGDERD 1514

Query: 1525 VILFSVGYGPDAEGRVSMNFGPLNRAGGERRLNVAVSRARYEMIIFSTLRSDMIDLNRTS 1584
            +I+ S+ Y P  +G++ MNFGP+N+ GGE+RLNV  SRAR+ M + ST++S+ I      
Sbjct: 1515 IIILSICYAPGPDGKMLMNFGPINQRGGEKRLNVIFSRARHRMAVVSTIQSEAI--TNVH 1572

Query: 1585 SIGVAGLKRFLEYAE 1599
            + G A L+ FL++A+
Sbjct: 1573 NDGAAALRAFLQFAQ 1587



 Score = 89.7 bits (221), Expect = 3e-21
 Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 659 PADIVLPIIA-DSSQLEAIYEAVHDKTFILHGPPGTGKSQTITNIIANALYKGKRVLFVA 717
           PAD    ++A D++Q  A+  A   ++FI+ GPPGTGKSQTITN+IA+   +GKRVLFV 
Sbjct: 616 PADEQWSVVASDATQNAAVGLARSQRSFIIQGPPGTGKSQTITNLIADYAGRGKRVLFVC 675

Query: 718 EKMAALSVVQNRLAAIGLAPFCLEIHSNKTKKSTVISQLKETTE 761
           EK AAL VV +RL   GL   C  IH ++T K   ++ L+   E
Sbjct: 676 EKRAALDVVFHRLKQSGLDSLCCLIHDSQTDKKAFVADLRTCYE 719



 Score = 44.7 bits (104), Expect = 1e-07
 Identities = 50/187 (26%), Positives = 73/187 (39%), Gaps = 28/187 (14%)

Query: 385 RLLDLSLRNNLLNIRITKNTLQLIPANLACLEDALAEGDEFRILHRPAEWENPAMEFGIY 444
           RL DLS RN LL  R T   + L  A++  +    +   E         W  P  +    
Sbjct: 256 RLFDLSRRNRLLYFRPTAANVNLTVASVPLMLQIESVRPE-----HICTWGGPFAD---- 306

Query: 445 SSIPESDPIADFVNSELSQKRLRF----YLPENDLGKALTHLYRSSRTSIEENGANTLYL 500
             +    P++        Q+ L F    YLP       L  L   +R    E G + L L
Sbjct: 307 -DVTAGRPVS-------LQQWLHFDDQPYLPA-----VLDRLIADTRRDRAEYGFSNLRL 353

Query: 501 ALGLLKWYETPSSERPRY-APILLLPVEII-RKSAAKGYVIRSREEETMMNITLLEMLRQ 558
            +  L+W+    +   R   P+L LPVE++ RK     YVI+    +   N  L   L Q
Sbjct: 354 VIAFLRWHNLKEAPDERILTPLLWLPVELVKRKGVRDQYVIQCENGDAEFNPVLRHHLSQ 413

Query: 559 NFGISVP 565
            + I +P
Sbjct: 414 LYDIRLP 420