Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1812 a.a., WGR domain-containing protein from Pseudomonas fluorescens SBW25

 Score =  219 bits (557), Expect = 3e-60
 Identities = 147/372 (39%), Positives = 206/372 (55%), Gaps = 61/372 (16%)

Query: 1273 KNIRNNARGISIRKLFDQIPTLLSRMCPCMLMSPISVAQYIDTDADKFDLIVFDEASQMP 1332
            ++IR  A G S R + D        + P  LMSP+SV+  +    D FD+++FDEASQ+P
Sbjct: 1227 RSIREMASGDSGRVIND--------LKPIWLMSPLSVSDTLPLTPDLFDVVIFDEASQIP 1278

Query: 1333 TYEAVGAIARGKNVVIVGDPKQMPPTSFFSVNTIDEDN--IEMEDLESIL-----DDCL- 1384
            + EAV A++R + V++VGD  Q+PPT+FFS     +DN  I MED E I      D  L 
Sbjct: 1279 SEEAVPALSRAQQVIVVGDEMQLPPTNFFSSAGDQDDNELIAMEDGEQIAINLDADSLLS 1338

Query: 1385 --ALSIPSKYLLWHYRSKHESLIAFSNSEYYDNKLMTFP--------------------- 1421
              A ++P+  L WHYRS+HE+LI+FSN+ +Y+ +L+T P                     
Sbjct: 1339 QAARNLPATLLAWHYRSRHEALISFSNAAFYEGRLITIPDRRIERPAPAHAALDSTDAQA 1398

Query: 1422 ----SPDNIESKVRMVAV-DGYYDKGKSRQNQAEAQAVVDEIARRLRSEELRKKSVGVVT 1476
                +   +ES +  + + DG Y    SR N AEA+ + + +   L+ E     S+G+V 
Sbjct: 1399 VVQGADTLLESPISFLKMSDGVY---LSRSNLAEARYIANLVRELLQRET--GLSLGIVA 1453

Query: 1477 FSVVQQALIEDLLSDLFIFHPELETFALECE---------EPLFIKNLENVQGDERDVIL 1527
            FS  QQ  IE  L DL        T  LE E           LF+KNLENVQGDERDVI+
Sbjct: 1454 FSEAQQGAIEQALEDLASSDSAFAT-RLEREYVREDAGQFNGLFVKNLENVQGDERDVII 1512

Query: 1528 FSVGYGPDAEGRVSMNFGPLNRAGGERRLNVAVSRARYEMIIFSTLRSDMIDLNRTSSIG 1587
             S+ Y P   G++ MNFGP+N+ GGE+RLNV  SRAR  M I S++ S+ I    T + G
Sbjct: 1513 LSICYAPGPNGKMLMNFGPINQRGGEKRLNVIFSRARKRMAIVSSIESEAI--TNTHNDG 1570

Query: 1588 VAGLKRFLEYAE 1599
             A L+ FL++A+
Sbjct: 1571 AAALRAFLQFAQ 1582



 Score = 88.6 bits (218), Expect = 6e-21
 Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 18/172 (10%)

Query: 596 WDVE-EQAILGIFSFNKFIMWNDIHNNAPKLTQNKIVSSLINGKIEWNAITEEMDASYMD 654
           WD++  Q  L  F++ K  +  D      +  QN+    + +         E  D     
Sbjct: 554 WDIDLTQVTLANFNYRKMSLVRDYAQLIDEPAQNEAFDRMFS--------IEPRDVEVQ- 604

Query: 655 RQLSPADIVLP-----IIADSSQLEAIYEAVHDKTFILHGPPGTGKSQTITNIIANALYK 709
              SP  I LP     +  D++Q  A+  A   + FI+ GPPGTGKSQTITN+IA+   +
Sbjct: 605 ---SPDPIPLPEQWNVVAGDATQNAAVSLARTGRNFIIQGPPGTGKSQTITNLIADYAGR 661

Query: 710 GKRVLFVAEKMAALSVVQNRLAAIGLAPFCLEIHSNKTKKSTVISQLKETTE 761
           G RVLFV EK AAL VV +RL    L   C  IH ++T K   +  L+E  E
Sbjct: 662 GLRVLFVCEKRAALDVVFHRLQQSELGELCCLIHDSQTDKKAFVGNLRECYE 713



 Score = 52.0 bits (123), Expect = 6e-10
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 21/196 (10%)

Query: 373 QTVLTKQLLWERRLLDLSLRNNLLNIRITKNTLQLIPANLACLEDALAEGDEFRILHRPA 432
           +TV+ + L    RL DLS RN LL  R T+  + L  A++  +    +   E     +P 
Sbjct: 242 RTVVLEHL--RNRLFDLSRRNRLLYFRPTQANVNLTVASVPLVMRIESIRPEALCTWQPT 299

Query: 433 EWENPAMEFGIYSS-IPESDPIADFVNSELSQKRLRFYLPENDLGKALTHLYRSSRTSIE 491
                   FG +S  +    P+         Q+ LRF   +  L  +L  + + +R    
Sbjct: 300 --------FGGFSEQVLSGKPVG-------LQQWLRFE-DQTWLQASLERIIQETRRDRA 343

Query: 492 ENGANTLYLALGLLKWYETPSSERPRYA-PILLLPVEIIRKSAAKG-YVIRSREEETMMN 549
           E G + L L +  ++W+    +   R   P+L LPVE+ RK   +  +V++  E E   N
Sbjct: 344 EFGFSNLRLVVAFMRWHNLKDTPEERIVTPLLWLPVELSRKKGVRDQFVLQCDETEAQFN 403

Query: 550 ITLLEMLRQNFGISVP 565
             L   LRQ + I +P
Sbjct: 404 PVLRHQLRQLYDIQLP 419