Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 577 a.a., AAA family ATPase from Pseudomonas fluorescens SBW25

 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 39/265 (14%)

Query: 1320 FDLIVFDEASQMPTYEAVGAIARGKNVVIVGDPKQMPPTSFFSVNTIDEDNIEMEDLESI 1379
            FD ++FDEASQ+    A+ A+ +GK  + +GD KQ+PP    S + + ++++      S+
Sbjct: 300  FDTVIFDEASQITVPLALMAMRKGKRFIFIGDQKQLPPV-LLSRSVLSKESM------SV 352

Query: 1380 LDDCLALSIPSKYLLWHYRSKHESLIAFSNSEYYDNKLMTF-PSPDNIESKVRMV----A 1434
                 A       +L      +  L  + +  YY  +L     + D + S +       A
Sbjct: 353  FARLTAQDADHTVMLEETYRMNRWLTQWPSQMYYGGQLRAAGHNRDRLLSPIHQADVSEA 412

Query: 1435 VDGYY--------DKGKSRQNQAEAQAVVDEIARRLRSEELRKKSVGVVTFSVVQQALIE 1486
            +D  Y        D     +N A+A+ VV ++ ++     L    +G+VT    Q   I 
Sbjct: 413  LDPQYCAVFIPTQDTKARNRNPADARCVV-QLCQQAHDMGLPLHEIGIVTPYRAQGRAIR 471

Query: 1487 DLLSDLFIFHPELETFALECEEPLFIKNLENVQGDERDVILFSVGYGPDA--EGRVSMNF 1544
              L+         + F  E  + +    +E +QG ER++++ S+  G +A      +  F
Sbjct: 472  KALA---------KQFGSEAAKTIVADTVERMQGQERELVILSLCSGDEAFISAIGTFFF 522

Query: 1545 GPLNRAGGERRLNVAVSRARYEMII 1569
             P        RLNV+++RA  ++II
Sbjct: 523  QP-------ERLNVSITRAMTKLII 540



 Score = 30.4 bits (67), Expect = 6e-04
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 687 LHGPPGTGKSQTITNIIANALYKGKRVLFVAEKMAALSVVQNRLAA 732
           + GPPGTGK++ +  I    + +G++V   +    A++   +++AA
Sbjct: 199 IQGPPGTGKTRALALIAQLLVERGEQVFVTSHTHMAINNALSKIAA 244