Pairwise Alignments

Query, 559 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 374 a.a., polysaccharide lyase from Pectobacterium carotovorum WPP14

 Score = 45.4 bits (106), Expect = 4e-09
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%)

Query: 82  GKNATGGRGGKVVIVTNTNDDGEGSFRWALQQCSQNEATTVVFAVSGKIELKSEIRCKAK 141
           GK   GG    +VI  N N+D       AL + ++N+        +  +E+K       K
Sbjct: 63  GKKVKGG-AYPLVITYNGNED-------ALIKAAENDICGQWKKDARGVEIKEF----TK 110

Query: 142 NFTLAGQTAPGDGVCIIKNEINFG----GSENFIIRHMRFRVGEKDASGKEHNAACLRVE 197
             T+ G            +  NFG     S + +IR+MRF        G   +   +R++
Sbjct: 111 GITIIGTNG---------SSANFGIWLTKSSDIVIRNMRFGY----MPGGAQDGDAIRID 157

Query: 198 NANNFIIDHC-----SFSWASEENTDF-----IDTHFSTVQWCISSEGLYYSVNKKGARA 247
           N  N  IDH      +F  A  ++ D      ID   ++    +S   ++  + K G   
Sbjct: 158 NTPNVWIDHNEIFAKNFECAGTKDGDTTFESAIDIKKASTNVTVSYNYIH-GIKKVGLSG 216

Query: 248 YGGAWGGTSSTYHHNLFAHCNSRTPLMNGAR 278
           +  +  G   TYHHN++   N+R PL  G +
Sbjct: 217 FSSSDTGRDLTYHHNIYDDVNARLPLQRGGQ 247