Pairwise Alignments

Query, 559 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 425 a.a., pectate lyase from Pectobacterium carotovorum WPP14

 Score =  100 bits (249), Expect = 1e-25
 Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 32/253 (12%)

Query: 74  AFPTAEGFGKNATGGRGGKVVIVTNTNDDGEGSFRWALQQCSQNEATTVVFAVSGKIEL- 132
           A P  +GFG +   G GG+++ VT     G GS R AL   +      +VF V G I+L 
Sbjct: 30  AAPELKGFGTDTVAGSGGRIIRVTTLASSGAGSLREAL---AAKGPRIIVFEVGGIIDLN 86

Query: 133 KSEIRCKAKNFTLAGQTAPGDGVCIIKNEINFGGSENFIIRHMRFRVGEKDA---SGKEH 189
           KS++R      T+AGQTAP  G+ II+  +    + + +++H+RFR+G+      SG E 
Sbjct: 87  KSDLRLSEPFVTIAGQTAPSPGITIIRGGMGI-STHDVLMQHIRFRIGDAGTGKKSGFER 145

Query: 190 NAACLRVENANNFIIDHCSFSWASEENTDFI---------DTHFSTVQWCISSEGLYYSV 240
           + + +  ++A N +IDH SF+W ++EN               H  T+   I +EGLY S 
Sbjct: 146 DVS-INGKDAYNVVIDHSSFAWGTDENLSISGPRYDGPQGTAHRITLSNNIVAEGLYDSA 204

Query: 241 NKKGARAYGGAW--GGTSSTYHHNLFAHCNSRTPLMN-GARGKDPGQDIVVYMEYINNVN 297
           + KG  + G       T  +   +L+AH N R      G+ G             +NN+ 
Sbjct: 205 HTKGIHSMGTLVHDNVTDVSIVGSLYAHNNERNAWFKAGSTG-----------VMVNNLI 253

Query: 298 YNWGSQMATYGGM 310
           YN G      GG+
Sbjct: 254 YNPGIWGVRVGGV 266