Pairwise Alignments

Query, 399 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 379 a.a., Rhamnogalacturonides degradation protein RhiN from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 94.7 bits (234), Expect = 4e-24
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 36/308 (11%)

Query: 42  MIRCPESWQLDFQPRLKWDYCHGLELGAMLDVYDTYGDKKIRD-----YAIAYADTMVHE 96
           ++R  +   +D +    W++ HG+ L  M   Y   GD+ +R      +A  +A+    +
Sbjct: 46  LLRLDDGRVIDTKGWAGWEWTHGVGLYGMYHYYQQTGDQTMRKIIDDWFADRFAEGATTK 105

Query: 97  DGSITAYKLTDYSLDRINSGKILFRIYEQTKDEKYKKALDLLYSQFA--GQPRNEDGGFW 154
           + +  A  LT           + +R YE+T++  Y   L+  ++++A    PR + GG  
Sbjct: 106 NVNTMAPFLT-----------LAYR-YEETRNPAYLPWLET-WAEWAMNEMPRTDHGGMQ 152

Query: 155 HKKIYPH---QMWLDGLYMGAPFYAEYAFRNNRPQDYADVINQFITCARHTYDPKNGLYR 211
           H  +      QMW D L M     A+     NRP+   +   QF+   ++  D + GL+ 
Sbjct: 153 HITLAEENHQQMWDDTLMMTVLPLAKIGKLLNRPEYVEEATYQFLLHVQNLMDKETGLWF 212

Query: 212 HACDVSRTERWADPVTGQSKHCWGRALGWYAMALVDVLDFI--PKHEAGRDSLLAILDNV 269
           H         +A+         W R   W  + + D L+ +  P++ A R  L+ +L+  
Sbjct: 213 HGWSYDGHHNFANAR-------WARGNSWLTIVIPDFLELLDLPENNAVRRYLVQVLNAQ 265

Query: 270 AVQVKKLQDPETGGWYQVMDRSGDKGNYLESSCSAMFIYSLFKAVRMGYIDPSYLDVAKA 329
              + K QD E+G W+ ++D   D  +YLE+S +A F Y + KAVR  Y++  Y  VA+ 
Sbjct: 266 IAALAKCQD-ESGLWHTLLD---DPHSYLEASATAGFAYGILKAVRKRYVERHYAQVAEK 321

Query: 330 GYEGFLKN 337
              G +K+
Sbjct: 322 AIRGIVKH 329