Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 203 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 76.6 bits (187), Expect = 2e-19
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 25/175 (14%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLIK- 61
           +  LY  Y SK+   +++  +   DAE + Q+VF  LW KR+ +    ++NAY+F +++ 
Sbjct: 28  YYHLYERYASKIYHVSRKMELSHHDAEEVVQEVFLYLWKKRNELRSDLSINAYIFSIVRS 87

Query: 62  ---NRCLDHLKHKMFEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEG----NETEMLV 114
              NRC    +   F+Q         + + M+         D S+++E      +     
Sbjct: 88  LVINRCQKKARFTAFQQ---------YSVPMNK--------DFSNVTEDTVIYRDLHAYA 130

Query: 115 RNAINSLPRKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKLN 169
             AI++LP K R++F++  V  +   EI+ +L +SV TVE Q+  A K LR + N
Sbjct: 131 SKAIDTLPVKQREVFIMKTVNHMTAEEIAAQLNLSVRTVENQLYRATKSLRHRFN 185