Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLIKN 62
           F E Y  ++ ++  F   + +   DAE ITQDVF   W  R ++D  + + AYLF + KN
Sbjct: 20  FHEFYQLFHKRIYFFCIHYGLKSSDAEEITQDVFVKFWCSRKNIDPEKCIKAYLFMISKN 79

Query: 63  RCLDHLKHKMFEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEGNETEMLVRNAINSLP 122
             LD L+ K    K  ++ Q +  + ++         +  +  E NE   +V   + +LP
Sbjct: 80  TILDMLR-KSIRSKANKTYQMNLILPVN---------NTENTLEYNELMGIVEKTLTALP 129

Query: 123 RKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLR 165
            + R +F +SR++G+ ++EI+  L IS  TVE  + +AL+  R
Sbjct: 130 ERRRQVFEMSRLQGMSHKEIASNLNISTKTVENHLTLALQNFR 172