Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 187 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  114 bits (285), Expect = 1e-30
 Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 14/168 (8%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLIKN 62
           F   + +++  L  +A   V  E++AE I Q VF  +W KRDS+    ++ AYL++++  
Sbjct: 18  FESTFKSHFQALYAYACMLVKDEDEAEEIVQTVFLKIWEKRDSITIASSLKAYLYQMVYR 77

Query: 63  RCLDHLKHKMFEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEGNETEML--VRNAINS 120
             +++L+H+  +QK+ +           + L   N      + EG++ E++  ++NA+  
Sbjct: 78  NSMNYLRHQKVKQKHHD-----------ITLHQANDAG-PQMDEGHDHELMDALKNALQE 125

Query: 121 LPRKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKL 168
           LP KCR +FLLSR E LKY+EI++RLGISV TVE  MG ALK LR+ L
Sbjct: 126 LPEKCRKVFLLSRYESLKYQEIADRLGISVKTVETHMGKALKHLRIAL 173