Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 192 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  107 bits (268), Expect = 9e-29
 Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 6/166 (3%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLIKN 62
           F  L+  YY KL+  AK ++   EDAE I QDVF  LW +R ++  + N  +YLF + KN
Sbjct: 25  FELLFKLYYDKLLHLAKYYLNSTEDAEEIVQDVFIKLWERRRNITALNN--SYLFTITKN 82

Query: 63  RCLDHLKHKMFEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEGNETEMLVRNAINSLP 122
            CLDHLKH+   QK     +  +E +++  L+ +     S I E  E +  ++ +I +LP
Sbjct: 83  ACLDHLKHRSVVQK---KSKEHYERQLADPLRFIQNETASLILE-KELDEKIQESIAALP 138

Query: 123 RKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKL 168
            K R++F  SR+EG K  EI++ L IS  TV+  + +ALK +R++L
Sbjct: 139 DKQREVFTKSRLEGKKNMEIAQELKISKRTVDTHITLALKAMRLQL 184