Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 181 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 84.3 bits (207), Expect = 1e-21
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 16/176 (9%)

Query: 1   MDFSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLI 60
           M F E+Y  Y+ +L     +    +E  E + Q+VF ++W KR S+    ++ AYLF  +
Sbjct: 18  MAFVEVYDKYWKQLFNSGYKRFQKKEIVEGLVQEVFVEMWQKRASLMVHTSLGAYLFTAL 77

Query: 61  KNRCLDHLKHKMFEQKYIESV---QTSFEIEMSLKLQSLNRFDVSDISEGNETEMLVRNA 117
           K + ++ +K +M ++KY+  V   +++F  E+  K+               E +   +  
Sbjct: 78  KYKVINQMKSQMVKEKYVAFVTSRKSNFGSEVEEKIFY------------KELDEAYKQE 125

Query: 118 INSLPRKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKL-NICL 172
           I +LP + + ++ L   EGL Y EIS+ +GISV+TVE  M  ALK LR  L N C+
Sbjct: 126 IANLPSQAKRVYELKNTEGLSYVEISQEMGISVSTVEKHMIKALKILRQNLRNYCV 181