Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 204 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 79.0 bits (193), Expect = 5e-20
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLIKN 62
           F ELY  Y  ++  FAK     ++ AE   Q VF  LW KR  ++   N  +YLF  +K+
Sbjct: 31  FDELYHRYAPRVYGFAKRVFHDKDVAEEAVQVVFVKLWEKRKGLNEQLNFKSYLFTAVKH 90

Query: 63  RCLDHLKHKMFEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEGNETEMLVRNAINSLP 122
           +  + L+           V+ + ++E  +   +       ++ E  E E      I  LP
Sbjct: 91  QVYNRLRE----------VKNTVDLEEMVTDHTYQGVSGLEVLEYKEFEESALGLIERLP 140

Query: 123 RKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKL 168
              + +F LSR+EG+ ++EI+E+LG+SV TVE    +A K L+ +L
Sbjct: 141 NVQQKVFKLSRLEGVSHKEIAEKLGLSVRTVEHHCYLATKFLKGQL 186