Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 187 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score = 84.7 bits (208), Expect = 8e-22
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAK--RDSMDRIENMN-AYLFRL 59
           F +LY  YY+    +AK FV  +E  E+I  DVFT LW K   DS D   N   AY+   
Sbjct: 14  FKQLYEEYYAPFCLYAKRFVDDKETREDIVSDVFTSLWDKLDTDSFDLQSNTALAYIKMC 73

Query: 60  IKNRCLDHLKHKMFEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEGNETEMLVRNAIN 119
           +KN CL+ LKH+ +E  Y E++Q         K   +   +   I   +E   ++   +N
Sbjct: 74  VKNSCLNFLKHQEYEWSYAENIQ---------KKAPVYETEPDSIYTLDELYRMLYETLN 124

Query: 120 SLPRKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKL 168
            LP   R +F+ S  EG  + EI+E + +SV ++       ++ LR +L
Sbjct: 125 KLPENYRTVFIKSFFEGKTHTEIAEEMNLSVKSINRYKQKTMELLRNEL 173