Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 190 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score = 85.9 bits (211), Expect = 4e-22
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 20/171 (11%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLIKN 62
           F  L+L YYS L  F K ++ +E DAE +  D+ T LW  R+      ++ +YLF  ++N
Sbjct: 20  FDTLFLKYYSILCAFGKYYIPIE-DAEEVVLDIMTWLWENREFQIIETSLRSYLFMAVRN 78

Query: 63  RCLD-----HLKHKMFEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEGNETEMLVRNA 117
           RCLD       K + +E  + + +QTSFE                D     E    +  A
Sbjct: 79  RCLDLISKNQTKRRCYEHMFAKEMQTSFE--------------DPDFYVVEELMAKIEKA 124

Query: 118 INSLPRKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKL 168
           +  LP   R  F +SR +   Y+EI++ L +S+  VE ++  AL+ LRV+L
Sbjct: 125 VMRLPDSYRITFEMSRYQDKTYKEIAKELNVSIKLVEYRIQQALRLLRVEL 175