Pairwise Alignments

Query, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 183 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score = 80.5 bits (197), Expect = 1e-20
 Identities = 46/170 (27%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 3   FSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSMDRIENMNAYLFRLIKN 62
           F+     Y S+L  +    +  +E AE I  DVF ++W  R S+  I NMNA++  +   
Sbjct: 19  FNRFMEHYSSRLYHYTFALLGQKESAEEIVSDVFFEVWKNRKSLAEIGNMNAWIQTITYR 78

Query: 63  RCLDHLKHKM--FEQKYIESVQTSFEIEMSLKLQSLNRFDVSDISEGNETEMLVRNAINS 120
           + +  L+ +   +E  + +     FE   S   + +++ +++ I++          AI  
Sbjct: 79  KAISFLRKETGKYELSFDDIEDFIFEPVQSPAEEMISKEEMAKIND----------AIQQ 128

Query: 121 LPRKCRDIFLLSRVEGLKYREISERLGISVNTVECQMGIALKKLRVKLNI 170
           LP KC+ +F L++++GL Y++I++ L ISV T+   +  AL ++  +LN+
Sbjct: 129 LPPKCKHVFFLAKIDGLPYKDIADMLNISVKTINNHIAFALDEIAKRLNL 178