Pairwise Alignments

Query, 370 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 430 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  197 bits (500), Expect = 6e-55
 Identities = 119/373 (31%), Positives = 187/373 (50%), Gaps = 25/373 (6%)

Query: 6   QTFNVLFWIRKGRTNEK-MSPLSCRVTISGQRYEIPTKLHLRSESWSAVAQKSLGKTAND 64
           +TF + F IR+ + +E  M+P+  R+T+ G+R E+  K  +    W     K+ G     
Sbjct: 5   KTFGIQFIIRQNKLDENGMTPIRARITVDGKRVELSVKKKISPSLWDHGRGKAKGNNPES 64

Query: 65  KEVNRYIEDLKITIEDTIAKIRQKSYPLNIENFKLMFQTQDNEFSTISTLFDYHEIMEKK 124
           +  NR+++ ++  + +   ++  +   +  E  K  F   + +  T+  L D+H      
Sbjct: 65  RTFNRFLDHIRARVLECHQELYIEKKTITPETVKNRFLGIEEQEHTLMELVDFHNTQNMG 124

Query: 125 NLRTSTFIGYHVTKKHLLNFIRIKYHVSDYDLAAVDKAFVYEFYAYLQGYRREGDT--VC 182
            L   T   Y  T++HLL F++     SD  L+ +D  F+ ++  +L+ ++ +       
Sbjct: 125 VLSEGTLKNYRTTERHLLEFLKTXKRKSDIPLSDIDYKFITDYEHHLRTFKPKDHRRRPV 184

Query: 183 AVNGALKHIQRFKKVMNVALQNEWISRNPVC-------------------LLNAK--KTK 221
           A NG +KH+ R KK+M +A + EWI ++P                      LN K    K
Sbjct: 185 ANNGVMKHLIRLKKLMTLAFKMEWIKKDPFLNYKFRYNLAFKMEWIKKDPFLNYKFRYKK 244

Query: 222 VERGFLSEKELKSLEEVPLP-ANLSIVRDVFIFAVYTGLSYVDIENLTNENINVGIDKSL 280
           V+R FL  +EL  +E      A L  VRD+F+F+ YTGLSY+D  NLT  NI  GID  L
Sbjct: 245 VQRQFLEMEELSRIESKEFTIARLDWVRDLFVFSCYTGLSYIDSTNLTQANIGKGIDGDL 304

Query: 281 WLSYYRQKTDIHAILPLLQPAVNILKRYEAYHEGKRNNHIFPVPLNQVMNRYLKKVAKQA 340
           WL   R+KTD    LPLL  A+ IL +Y+ + + K N  + P   NQ MN YLK++A   
Sbjct: 305 WLISKRKKTDEPVKLPLLPKAIEILDKYKDHPKAKANGTLLPPISNQKMNSYLKEIADLC 364

Query: 341 GVDKNITFHCARH 353
            + K +T H ARH
Sbjct: 365 DITKTLTHHTARH 377