Pairwise Alignments

Query, 370 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 437 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 56/373 (15%)

Query: 12  FWIRKGRTNEKMS-PLSCRVTISGQRYEIPTKLHLRSESWSAVAQK----------SLGK 60
           F +RK   N++   P+S  + ++GQ+ +I T + +  E WS  A+            L K
Sbjct: 7   FTLRKDLINKRGEMPISLIIALNGQKRKISTGISIIPELWSEAARNIMPLTLKQRNQLEK 66

Query: 61  TANDK--------EVNRYIEDLKITIEDTIAKIRQKSYPLN----IENFKLMFQTQDNEF 108
           T  D         +    + +LK  I+    + R    P +    ++++K   + +  + 
Sbjct: 67  THGDLVPPKAVLIKYESELNELKFKIQKIEEEFRFSGVPYSASKIVDSYKESNEEKVEKP 126

Query: 109 STISTLFDYHE--IMEKKNLRTS-TFIGYHVTKKHLLNFIR-----IKYHVSDYDLAAVD 160
                ++D+ +  I + + +R   + + Y   +KHL NF +     I++   DY      
Sbjct: 127 EPEGLVYDFIDQYIQDNELIRAKGSLVVYKSLRKHLKNFQKKSRKKIRFENMDY------ 180

Query: 161 KAFVYEFYAYLQGYRREGDT---VCAVNGAL--KHIQRFKKVMNVALQNEWISRNPVCLL 215
             F+  F  YL G++   +    V  +N     K +   K  ++ A +      +     
Sbjct: 181 -IFMQAFQNYLVGWKEVNNKTGRVTTLNNVSIGKQLSTLKTFLSYARRRGIKVHDGYKEF 239

Query: 216 NAKKTKVERGFLSEKELKSLEEVPLPAN--LSIVRDVFIFAVYTGLSYVDIENLTNENIN 273
             KK ++E   L+++E  +L  + L  +  L  V+D+FIF+  TG  Y D+  L  E+I 
Sbjct: 240 TIKKERLEVIALNQREFDALYNLDLGKHKRLQQVKDIFIFSCATGYRYSDLRQLRREHIK 299

Query: 274 VGIDKSLWLSYYRQKTDIHAILPLLQPAVNILKRYEAYHEGKRNNHIFPVPLNQVMNRYL 333
            G +  L ++    KT   +++PL + +  IL +YE   E        P+  NQ  N Y+
Sbjct: 300 -GDEIRLTIT----KTKEPSVVPLNRYSREILAKYEERVEP------LPIISNQKFNNYV 348

Query: 334 KKVAKQAGVDKNI 346
           K++ K AG+D+ +
Sbjct: 349 KELCKLAGIDEPV 361