Pairwise Alignments

Query, 370 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 397 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 71.2 bits (173), Expect = 4e-17
 Identities = 76/325 (23%), Positives = 151/325 (46%), Gaps = 48/325 (14%)

Query: 55  QKSLGKTANDKEVNRYIEDLKITIEDTIAKIRQKSYPLNIENFKLMFQTQDNEFSTISTL 114
           + SL      KE+NR ++      ++ I ++ + +    +++  + F+ + +  S +   
Sbjct: 44  EASLYSMKEIKEINRELKRDYKRFQNRILELERNNEEYLVDDI-VEFKKKKSHRSYLLMQ 102

Query: 115 FDYHEIMEKKNL-RTSTFIGYHVTKKHLLNFIRIKY-HVSDYDLAAVDKAFV--YEFYAY 170
           +   +I  KK + +      YH T   L  +I +K    SD  +  ++ +FV  YE Y  
Sbjct: 103 YIETQISYKKKMGKDGIAAAYHSTYISLKKYIGMKSARKSDIRMEEINFSFVVGYEDYLN 162

Query: 171 LQGYRREGDTVCAVNGALKHIQRFKKVMNVALQNEWI--SRNPVCLLNAKKTKVERGFLS 228
            QG  R        N    +++ F+ + N ++++ +   S NP   +  K  K  +  ++
Sbjct: 163 AQGLAR--------NTINYYLRNFRTIYNSSIRDGFKPKSENPFTYIQTKPCKTIKRAIN 214

Query: 229 EKELKSLEEVPLPAN--LSIVRDVFIFAVYT-GLSYVDIENLTNENINVGIDKSLWLSYY 285
           + ++K L  + LP +  + I RD+++F+ Y  G+++VDI  L  +NI  GI     LSY 
Sbjct: 215 KDDMKKLSSLILPVHSGMDIARDMYLFSFYAQGMAFVDIVFLKKKNIRDGI-----LSYR 269

Query: 286 RQKTD--IHAIL-PLLQPAVNILKRYEAYHEGKRNNHIFPVPLNQV-------------- 328
           R K+   IH ++ P +Q    ++ +Y        + ++FP+    +              
Sbjct: 270 RHKSQQLIHIVITPQMQ---GLIDKY-----ANDSEYVFPIIDTSLSTSIYDQYRLALGR 321

Query: 329 MNRYLKKVAKQAGVDKNITFHCARH 353
           +NRYLKK+  +  ++  +T + ARH
Sbjct: 322 VNRYLKKITFRLNINVRLTTYTARH 346