Pairwise Alignments

Query, 370 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 396 a.a., integrase protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  112 bits (279), Expect = 2e-29
 Identities = 100/378 (26%), Positives = 172/378 (45%), Gaps = 32/378 (8%)

Query: 4   KKQTFNVLFWIRKGRTNEKMSPLSCRVTISGQRYEIPTKLHLRSESWSAVAQKSLGKTAN 63
           KK +++++F  +K    + M+ +     ++ ++    T+++L+ + W  V ++ +    N
Sbjct: 2   KKISYSLVFNRKKKLNKKGMALVQVEAYLNRRKMYFSTRVYLKPDQWD-VKRRMVKNHPN 60

Query: 64  DKEVNRYIEDLKITIEDTIAKIRQKSYPLNIENFKLMFQTQDNEFSTISTLFDYHEIMEK 123
              +NR + D    IE     + Q+   +++++ K   +  +N  ++  T F   E +  
Sbjct: 61  SDALNRMLYDFIADIEQKELGLWQQRRSISLDSLKDSIEKPENNGNSFLTFFK--EEVSN 118

Query: 124 KNLRTSTFIGYHVTKKHLLNFIRIKYHVSDYDLAAVDKAFVYEFYAYLQ--GYRREGDTV 181
            +L+ ST       + HL     ++ +  D     +   FV  F  YLQ  GY       
Sbjct: 119 SSLKEST------RQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYH------ 166

Query: 182 CAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGF--LSEKELKSLEEVP 239
             +N   KH++  K+ +NVA+  E++          K   +E     LS +EL  +EEV 
Sbjct: 167 --LNTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVN 224

Query: 240 LPANLSIV---RDVFIFAVYTGLSYVDIENLTNENINVGIDKSLWLSYYRQKTDIHAILP 296
           L    + +   +D F+F  Y GL Y D  NLT  NI V + +  WL Y   KT I   LP
Sbjct: 225 LEGKFTKLQKSKDAFLFCCYAGLRYSDFINLTAANI-VELHQETWLIYKSVKTGIDVRLP 283

Query: 297 L-LQPAVNILKRYEAYHEGKRNNHIFPVPLNQVMNRYLKKVAKQAGVDKNITFHCARHIE 355
           L L      L+  E Y +    N  F +  N  +N+ L  +AK A +DK I+FH ARH  
Sbjct: 284 LYLLFEGKGLRVLETYKDDL--NGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTN 341

Query: 356 LPLSL----NLNRLQRLV 369
             L +    N+  +Q+L+
Sbjct: 342 ATLLIYSGANITTVQKLL 359