Pairwise Alignments

Query, 370 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 411 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  157 bits (398), Expect = 4e-43
 Identities = 96/356 (26%), Positives = 181/356 (50%), Gaps = 16/356 (4%)

Query: 5   KQTFNVLFWIRKG--RTNEKMSPLSCRVTISGQRYEIPTKLHLRSESWSAVAQKSLGKTA 62
           + TF +LF+++KG  R N  + PL CR+T+ G+  +   KL +  + W     ++ GK+A
Sbjct: 3   RSTFKILFYVKKGSERANGYL-PLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKSA 61

Query: 63  NDKEVNRYIEDLKITIEDTIAKIRQKSYPLNIENFKLMFQTQDNEFSTISTLFDYHEIME 122
             +++N  ++ +++ +     ++ Q    +     +        +  T+  LF+ H    
Sbjct: 62  EAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEF 121

Query: 123 KKNLRTS----TFIGYHVTKKHLLNFIRIKYHVSDYDLAAVDKAFVYEFYAYLQGYRREG 178
            K +  S    T+  Y    +HL  F+   Y   D  L  ++  F+  F  +L+  ++  
Sbjct: 122 IKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKK-- 179

Query: 179 DTVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLSEKELKSLEEV 238
              C  N    ++   K V+++A  +  +  NP          V+RG+L+E+E+++L E 
Sbjct: 180 ---CRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMET 236

Query: 239 PLPANL-SIVRDVFIFAVYTGLSYVDIENLTNENINVGIDKSLWLSYYRQKTDIHAILPL 297
           P+ +    +VRD+FIF+V+TGL+Y D++ LT + +    D +LW+   R+KT+  + + L
Sbjct: 237 PVKSGTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRL 296

Query: 298 LQPAVNILKRYEAYHEGKRNNHIFPVPLNQVMNRYLKKVAKQAGVDKNITFHCARH 353
           L     I+++Y+   E  ++ H+FPVP N   N  LK++ +Q G    +T+H ARH
Sbjct: 297 LDVPKRIIEKYK---ELSKDGHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARH 349