Pairwise Alignments

Query, 370 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 410 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  200 bits (508), Expect = 7e-56
 Identities = 124/358 (34%), Positives = 198/358 (55%), Gaps = 22/358 (6%)

Query: 5   KQTFNVLFWIRKG---RTNEKMSPLSCRVTISGQRYEIPTKLHLRSESWSAVAQKSLGKT 61
           K TF VLF+++KG   +  E M  +  R+TI G+  +  TK  +  +SW+  A K+ GK 
Sbjct: 2   KSTFKVLFYLKKGSEKKNGEVM--IMARITIDGKLCQFSTKQSILPDSWNIAAGKAKGKD 59

Query: 62  ANDKEVNRYIEDLKITIEDTIAKIRQKSYPLNIENFKLMFQTQDNEFSTISTLFDYHEIM 121
           A   ++N  ++D+K ++ +   + +++   +  E  K  F     +  T+ TLF  H   
Sbjct: 60  AG--KINALLDDIKASLNNIYHEQQRRDNYVTAEKVKNEFLGHSEKHETVLTLFKKHNDD 117

Query: 122 EKKNLRTS----TFIGYHVTKKHLLNFIRIKYHVSDYDLAAVDKAFVYEFYAYLQGYRRE 177
            K+ +  S    T+  Y VT++HL  FI+ KY+VSD+ +  +   F+ +F  YL+   + 
Sbjct: 118 VKQLVGISKTIATYRKYEVTRRHLAEFIQSKYNVSDFAINEITPMFITDFELYLRTTCK- 176

Query: 178 GDTVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLSEKELKS-LE 236
               C  N   K +Q FK+++ +A  N  +  +P      +  KV+RG+LSE E+K  L+
Sbjct: 177 ----CGYNTTAKFMQFFKRIILIARNNGILIGDPFASYKIRLEKVDRGYLSEDEIKIILK 232

Query: 237 EVPLPANLSIVRDVFIFAVYTGLSYVDIENLTNENINVGIDKSLWLSYYRQKTDIHAILP 296
           +  +   L  VRD+FIF+ +TGL+Y+D+ NLT +NI    D +LW+   RQKT+    +P
Sbjct: 233 KKMVSERLENVRDLFIFSCFTGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVP 292

Query: 297 LLQPAVNILKRYEA-YHEGKRNNHIFPVPLNQVMNRYLKKVAKQAGVDKNITFHCARH 353
           LL     ILK+Y+    +GK    I PV  NQ +N YLK++A   G+ KN+TFH ARH
Sbjct: 293 LLDIPKMILKKYKGNLPDGK----ILPVISNQKLNAYLKEIADVCGIKKNLTFHLARH 346